Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HGK51_RS00210 Genome accession   NZ_CP051511
Coordinates   35360..36496 (+) Length   378 a.a.
NCBI ID   WP_202166724.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30360..41496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS00175 (HGK51_00175) panD 30812..31162 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  HGK51_RS00180 (HGK51_00180) - 31173..31475 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HGK51_RS00185 (HGK51_00185) - 31475..32470 (+) 996 WP_202171147.1 PDZ domain-containing protein -
  HGK51_RS00190 (HGK51_00190) comB6 32478..33533 (+) 1056 WP_202171146.1 P-type conjugative transfer protein TrbL Machinery gene
  HGK51_RS00195 (HGK51_00195) comB7 33549..33662 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HGK51_RS00200 (HGK51_00200) comB8 33659..34402 (+) 744 WP_000660504.1 virB8 family protein Machinery gene
  HGK51_RS00205 (HGK51_00205) comB9 34402..35367 (+) 966 WP_202170806.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HGK51_RS00210 (HGK51_00210) comB10 35360..36496 (+) 1137 WP_202166724.1 DNA type IV secretion system protein ComB10 Machinery gene
  HGK51_RS00215 (HGK51_00215) - 36567..37979 (+) 1413 WP_202170807.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HGK51_RS00220 (HGK51_00220) gmd 37994..39139 (+) 1146 WP_000659855.1 GDP-mannose 4,6-dehydratase -
  HGK51_RS00225 (HGK51_00225) - 39132..40064 (+) 933 WP_001002423.1 GDP-L-fucose synthase -
  HGK51_RS00230 (HGK51_00230) hypE 40344..41342 (-) 999 WP_202170808.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42241.91 Da        Isoelectric Point: 9.9637

>NTDB_id=439412 HGK51_RS00210 WP_202166724.1 35360..36496(+) (comB10) [Helicobacter pylori strain ASHA-006]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=439412 HGK51_RS00210 WP_202166724.1 35360..36496(+) (comB10) [Helicobacter pylori strain ASHA-006]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.296

100

0.963