Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HGK51_RS01715 Genome accession   NZ_CP051511
Coordinates   349648..350052 (+) Length   134 a.a.
NCBI ID   WP_202170949.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344648..355052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS01680 (HGK51_01675) - 344828..345766 (-) 939 WP_202170945.1 tetraacyldisaccharide 4'-kinase -
  HGK51_RS01685 (HGK51_01680) - 345763..346545 (-) 783 WP_202170946.1 NAD+ synthase -
  HGK51_RS01695 (HGK51_01690) ilvC 346792..347784 (+) 993 WP_202170947.1 ketol-acid reductoisomerase -
  HGK51_RS01700 (HGK51_01695) minD 347803..348609 (+) 807 WP_001019101.1 septum site-determining protein MinD -
  HGK51_RS01705 (HGK51_01700) minE 348606..348839 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HGK51_RS01710 (HGK51_01705) dprA 348851..349651 (+) 801 WP_202170948.1 DNA-processing protein DprA Machinery gene
  HGK51_RS01715 (HGK51_01710) dprB 349648..350052 (+) 405 WP_202170949.1 Holliday junction resolvase RuvX Machinery gene
  HGK51_RS01720 (HGK51_01715) - 350220..350543 (+) 324 WP_202133082.1 tetratricopeptide repeat protein -
  HGK51_RS01725 (HGK51_01720) - 350733..351071 (+) 339 WP_000699912.1 hypothetical protein -
  HGK51_RS01730 (HGK51_01725) - 351055..351621 (+) 567 WP_202170950.1 hypothetical protein -
  HGK51_RS01735 (HGK51_01730) - 351633..351881 (+) 249 WP_237393196.1 lysozyme -
  HGK51_RS07845 - 351887..352264 (+) 378 WP_237393197.1 hypothetical protein -
  HGK51_RS01745 (HGK51_01740) - 352611..352998 (+) 388 Protein_341 DUF1294 domain-containing protein -
  HGK51_RS01750 (HGK51_01745) - 352998..353783 (+) 786 WP_202170951.1 hypothetical protein -
  HGK51_RS01755 (HGK51_01750) - 353773..354855 (+) 1083 WP_202170952.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15219.72 Da        Isoelectric Point: 9.4975

>NTDB_id=439416 HGK51_RS01715 WP_202170949.1 349648..350052(+) (dprB) [Helicobacter pylori strain ASHA-006]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439416 HGK51_RS01715 WP_202170949.1 349648..350052(+) (dprB) [Helicobacter pylori strain ASHA-006]
GTGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955