Detailed information NTG0439408

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HGK51_RS00190
• Genome accession: NZ_CP051511
• Coordinates: 32478..33533 (+)
• Length: 351 a.a.
• NCBI ID: WP_202171146.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-006
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27478..38533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGK51_RS00160 (HGK51_00160)	-	27891..28304 (+)	414	WP_097682194.1	universal stress protein	-
HGK51_RS00165 (HGK51_00165)	-	28325..28600 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HGK51_RS00170 (HGK51_00170)	-	28600..30822 (+)	2223	WP_202170805.1	ATP-dependent Clp protease ATP-binding subunit	-
HGK51_RS00175 (HGK51_00175)	panD	30812..31162 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HGK51_RS00180 (HGK51_00180)	-	31173..31475 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HGK51_RS00185 (HGK51_00185)	-	31475..32470 (+)	996	WP_202171147.1	PDZ domain-containing protein	-
HGK51_RS00190 (HGK51_00190)	comB6	32478..33533 (+)	1056	WP_202171146.1	P-type conjugative transfer protein TrbL	Machinery gene
HGK51_RS00195 (HGK51_00195)	comB7	33549..33662 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HGK51_RS00200 (HGK51_00200)	comB8	33659..34402 (+)	744	WP_000660504.1	virB8 family protein	Machinery gene
HGK51_RS00205 (HGK51_00205)	comB9	34402..35367 (+)	966	WP_202170806.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGK51_RS00210 (HGK51_00210)	comB10	35360..36496 (+)	1137	WP_202166724.1	DNA type IV secretion system protein ComB10	Machinery gene
HGK51_RS00215 (HGK51_00215)	-	36567..37979 (+)	1413	WP_202170807.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39746.76 Da
• Isoelectric Point: 8.8165

>NTDB_id=439408 HGK51_RS00190 WP_202171146.1 32478..33533(+) (comB6) [Helicobacter pylori strain ASHA-006]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFMGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTLPASSSVSASMSGGVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439408 HGK51_RS00190 WP_202171146.1 32478..33533(+) (comB6) [Helicobacter pylori strain ASHA-006]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTGTTTATGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCTACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAGCGGAGGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTGGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972