Detailed information NTG0439307

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG561_RS00210
• Genome accession: NZ_CP051506
• Coordinates: 35444..36580 (+)
• Length: 378 a.a.
• NCBI ID: WP_202168489.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-007
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30444..41580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG561_RS00175 (HG561_00175)	panD	30893..31243 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HG561_RS00180 (HG561_00180)	-	31254..31556 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG561_RS00185 (HG561_00185)	-	31556..32563 (+)	1008	WP_202168857.1	PDZ domain-containing protein	-
HG561_RS00190 (HG561_00190)	comB6	32571..33626 (+)	1056	WP_000786690.1	P-type conjugative transfer protein TrbL	Machinery gene
HG561_RS00195 (HG561_00195)	comB7	33642..33755 (+)	114	WP_001217864.1	hypothetical protein	Machinery gene
HG561_RS00200 (HG561_00200)	comB8	33752..34495 (+)	744	WP_000660502.1	virB8 family protein	Machinery gene
HG561_RS00205 (HG561_00205)	comB9	34495..35451 (+)	957	WP_202168488.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG561_RS00210 (HG561_00210)	comB10	35444..36580 (+)	1137	WP_202168489.1	DNA type IV secretion system protein ComB10	Machinery gene
HG561_RS00215 (HG561_00215)	-	36650..38062 (+)	1413	WP_000694822.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG561_RS00220 (HG561_00220)	gmd	38077..39222 (+)	1146	WP_000659885.1	GDP-mannose 4,6-dehydratase	-
HG561_RS00225 (HG561_00225)	-	39215..40147 (+)	933	WP_001002523.1	GDP-L-fucose synthase	-
HG561_RS00230 (HG561_00230)	hypE	40450..41448 (-)	999	WP_000378806.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42122.78 Da
• Isoelectric Point: 9.9555

>NTDB_id=439307 HG561_RS00210 WP_202168489.1 35444..36580(+) (comB10) [Helicobacter pylori strain SHIM-007]
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=439307 HG561_RS00210 WP_202168489.1 35444..36580(+) (comB10) [Helicobacter pylori strain SHIM-007]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGTATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96