Detailed information NTG0439303

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG561_RS00190
• Genome accession: NZ_CP051506
• Coordinates: 32571..33626 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786690.1
• Uniprot ID: A0A0E0WAC9
• Organism: Helicobacter pylori strain SHIM-007
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27571..38626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG561_RS00160 (HG561_00160)	-	27985..28398 (+)	414	WP_001023005.1	universal stress protein	-
HG561_RS00165 (HG561_00165)	-	28406..28681 (+)	276	WP_202168486.1	ATP-dependent Clp protease adaptor ClpS	-
HG561_RS00170 (HG561_00170)	-	28681..30903 (+)	2223	WP_202168487.1	ATP-dependent Clp protease ATP-binding subunit	-
HG561_RS00175 (HG561_00175)	panD	30893..31243 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HG561_RS00180 (HG561_00180)	-	31254..31556 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG561_RS00185 (HG561_00185)	-	31556..32563 (+)	1008	WP_202168857.1	PDZ domain-containing protein	-
HG561_RS00190 (HG561_00190)	comB6	32571..33626 (+)	1056	WP_000786690.1	P-type conjugative transfer protein TrbL	Machinery gene
HG561_RS00195 (HG561_00195)	comB7	33642..33755 (+)	114	WP_001217864.1	hypothetical protein	Machinery gene
HG561_RS00200 (HG561_00200)	comB8	33752..34495 (+)	744	WP_000660502.1	virB8 family protein	Machinery gene
HG561_RS00205 (HG561_00205)	comB9	34495..35451 (+)	957	WP_202168488.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG561_RS00210 (HG561_00210)	comB10	35444..36580 (+)	1137	WP_202168489.1	DNA type IV secretion system protein ComB10	Machinery gene
HG561_RS00215 (HG561_00215)	-	36650..38062 (+)	1413	WP_000694822.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39749.68 Da
• Isoelectric Point: 9.0413

>NTDB_id=439303 HG561_RS00190 WP_000786690.1 32571..33626(+) (comB6) [Helicobacter pylori strain SHIM-007]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFMGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSISGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439303 HG561_RS00190 WP_000786690.1 32571..33626(+) (comB6) [Helicobacter pylori strain SHIM-007]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTGTTTATGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACATGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTGGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

3D structure

• AlphaFold DB: A0A0E0WAC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972