Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG562_RS00215 Genome accession   NZ_CP051505
Coordinates   37344..38480 (+) Length   378 a.a.
NCBI ID   WP_001045868.1    Uniprot ID   A0AAE7TRN9
Organism   Helicobacter pylori strain SHIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32344..43480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG562_RS00180 (HG562_00180) panD 32816..33166 (+) 351 WP_000142269.1 aspartate 1-decarboxylase -
  HG562_RS00185 (HG562_00185) - 33177..33470 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HG562_RS00190 (HG562_00190) - 33470..34465 (+) 996 WP_000468441.1 PDZ domain-containing protein -
  HG562_RS00195 (HG562_00195) comB6 34471..35526 (+) 1056 WP_000786694.1 P-type conjugative transfer protein TrbL Machinery gene
  HG562_RS00200 (HG562_00200) comB7 35542..35655 (+) 114 WP_001217864.1 hypothetical protein Machinery gene
  HG562_RS00205 (HG562_00205) comB8 35652..36395 (+) 744 WP_000660502.1 virB8 family protein Machinery gene
  HG562_RS00210 (HG562_00210) comB9 36395..37351 (+) 957 WP_014662053.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG562_RS00215 (HG562_00215) comB10 37344..38480 (+) 1137 WP_001045868.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG562_RS00220 (HG562_00220) - 38552..39964 (+) 1413 WP_000694836.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG562_RS00225 (HG562_00225) gmd 39979..41124 (+) 1146 WP_000659844.1 GDP-mannose 4,6-dehydratase -
  HG562_RS00230 (HG562_00230) - 41117..42049 (+) 933 WP_001002520.1 GDP-L-fucose synthase -
  HG562_RS00235 (HG562_00235) hypE 42327..43325 (-) 999 WP_000378782.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42218.83 Da        Isoelectric Point: 9.8942

>NTDB_id=439284 HG562_RS00215 WP_001045868.1 37344..38480(+) (comB10) [Helicobacter pylori strain SHIM-010]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFNSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=439284 HG562_RS00215 WP_001045868.1 37344..38480(+) (comB10) [Helicobacter pylori strain SHIM-010]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAATAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGTGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.767

100

0.958