Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG563_RS00210 Genome accession   NZ_CP051504
Coordinates   36385..37341 (+) Length   318 a.a.
NCBI ID   WP_014662053.1    Uniprot ID   A0A0E0W9D0
Organism   Helicobacter pylori strain SHIM-011     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31385..42341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS00180 (HG563_00180) panD 32783..33133 (+) 351 WP_000142296.1 aspartate 1-decarboxylase -
  HG563_RS00185 (HG563_00185) - 33144..33446 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HG563_RS00190 (HG563_00190) - 33446..34453 (+) 1008 WP_000468454.1 PDZ domain-containing protein -
  HG563_RS00195 (HG563_00195) comB6 34461..35516 (+) 1056 WP_202273666.1 P-type conjugative transfer protein TrbL Machinery gene
  HG563_RS00200 (HG563_00200) comB7 35532..35645 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HG563_RS00205 (HG563_00205) comB8 35642..36385 (+) 744 WP_000660502.1 virB8 family protein Machinery gene
  HG563_RS00210 (HG563_00210) comB9 36385..37341 (+) 957 WP_014662053.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG563_RS00215 (HG563_00215) comB10 37334..38470 (+) 1137 WP_202273431.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG563_RS00220 (HG563_00220) - 38541..39953 (+) 1413 WP_000694833.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG563_RS00225 (HG563_00225) gmd 39981..41126 (+) 1146 WP_000659858.1 GDP-mannose 4,6-dehydratase -
  HG563_RS00230 (HG563_00230) - 41119..42051 (+) 933 WP_001002427.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36505.00 Da        Isoelectric Point: 9.4680

>NTDB_id=439262 HG563_RS00210 WP_014662053.1 36385..37341(+) (comB9) [Helicobacter pylori strain SHIM-011]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNSKPLKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSKLS
LMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=439262 HG563_RS00210 WP_014662053.1 36385..37341(+) (comB9) [Helicobacter pylori strain SHIM-011]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAGAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAGCAAACCCTT
AAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACTAATGCGATGAAAATCGTTAAAAAAGACATTC
AAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAAAAATCCAAACTCTCT
TTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCC
GGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTGAAGATG
TCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0W9D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.966

100

0.956