Detailed information NTG0439259

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG563_RS00195
• Genome accession: NZ_CP051504
• Coordinates: 34461..35516 (+)
• Length: 351 a.a.
• NCBI ID: WP_202273666.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-011
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29461..40516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG563_RS00165 (HG563_00165)	-	29875..30288 (+)	414	WP_001023005.1	universal stress protein	-
HG563_RS00170 (HG563_00170)	-	30296..30571 (+)	276	WP_000784913.1	ATP-dependent Clp protease adaptor ClpS	-
HG563_RS00175 (HG563_00175)	-	30571..32793 (+)	2223	WP_001051542.1	ATP-dependent Clp protease ATP-binding subunit	-
HG563_RS00180 (HG563_00180)	panD	32783..33133 (+)	351	WP_000142296.1	aspartate 1-decarboxylase	-
HG563_RS00185 (HG563_00185)	-	33144..33446 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG563_RS00190 (HG563_00190)	-	33446..34453 (+)	1008	WP_000468454.1	PDZ domain-containing protein	-
HG563_RS00195 (HG563_00195)	comB6	34461..35516 (+)	1056	WP_202273666.1	P-type conjugative transfer protein TrbL	Machinery gene
HG563_RS00200 (HG563_00200)	comB7	35532..35645 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HG563_RS00205 (HG563_00205)	comB8	35642..36385 (+)	744	WP_000660502.1	virB8 family protein	Machinery gene
HG563_RS00210 (HG563_00210)	comB9	36385..37341 (+)	957	WP_014662053.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG563_RS00215 (HG563_00215)	comB10	37334..38470 (+)	1137	WP_202273431.1	DNA type IV secretion system protein ComB10	Machinery gene
HG563_RS00220 (HG563_00220)	-	38541..39953 (+)	1413	WP_000694833.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39799.78 Da
• Isoelectric Point: 9.0413

>NTDB_id=439259 HG563_RS00195 WP_202273666.1 34461..35516(+) (comB6) [Helicobacter pylori strain SHIM-011]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFMGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439259 HG563_RS00195 WP_202273666.1 34461..35516(+) (comB6) [Helicobacter pylori strain SHIM-011]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTGTTTATGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACATGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGTGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977