Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG564_RS00205 Genome accession   NZ_CP051503
Coordinates   34471..35427 (+) Length   318 a.a.
NCBI ID   WP_014662053.1    Uniprot ID   A0A0E0W9D0
Organism   Helicobacter pylori strain SHIM-014     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29471..40427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS00175 (HG564_00175) panD 30890..31240 (+) 351 WP_000142269.1 aspartate 1-decarboxylase -
  HG564_RS00180 (HG564_00180) - 31251..31544 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HG564_RS00185 (HG564_00185) - 31544..32539 (+) 996 WP_202172301.1 PDZ domain-containing protein -
  HG564_RS00190 (HG564_00190) comB6 32547..33602 (+) 1056 WP_202172300.1 P-type conjugative transfer protein TrbL Machinery gene
  HG564_RS00195 (HG564_00195) comB7 33618..33731 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HG564_RS00200 (HG564_00200) comB8 33728..34471 (+) 744 WP_202171890.1 virB8 family protein Machinery gene
  HG564_RS00205 (HG564_00205) comB9 34471..35427 (+) 957 WP_014662053.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG564_RS00210 (HG564_00210) comB10 35420..36556 (+) 1137 WP_001045877.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG564_RS00215 (HG564_00215) - 36626..38038 (+) 1413 WP_202171891.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG564_RS00220 (HG564_00220) gmd 38053..39198 (+) 1146 WP_000659841.1 GDP-mannose 4,6-dehydratase -
  HG564_RS00225 (HG564_00225) - 39191..40123 (+) 933 WP_001002523.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36505.00 Da        Isoelectric Point: 9.4680

>NTDB_id=439241 HG564_RS00205 WP_014662053.1 34471..35427(+) (comB9) [Helicobacter pylori strain SHIM-014]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNSKPLKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSKLS
LMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=439241 HG564_RS00205 WP_014662053.1 34471..35427(+) (comB9) [Helicobacter pylori strain SHIM-014]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAGAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACTTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAGCAAACCCTT
AAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACTAATGCGATGAAAATCGTTAAAAAAGACATTC
AAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAAAAATCCAAACTCTCT
TTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCC
GGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTGAAGATG
TTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0W9D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.966

100

0.956