Detailed information NTG0439238

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG564_RS00190
• Genome accession: NZ_CP051503
• Coordinates: 32547..33602 (+)
• Length: 351 a.a.
• NCBI ID: WP_202172300.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-014
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27547..38602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG564_RS00160 (HG564_00160)	-	27982..28395 (+)	414	WP_001023005.1	universal stress protein	-
HG564_RS00165 (HG564_00165)	-	28403..28678 (+)	276	WP_000784913.1	ATP-dependent Clp protease adaptor ClpS	-
HG564_RS00170 (HG564_00170)	-	28678..30900 (+)	2223	WP_202171889.1	ATP-dependent Clp protease ATP-binding subunit	-
HG564_RS00175 (HG564_00175)	panD	30890..31240 (+)	351	WP_000142269.1	aspartate 1-decarboxylase	-
HG564_RS00180 (HG564_00180)	-	31251..31544 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG564_RS00185 (HG564_00185)	-	31544..32539 (+)	996	WP_202172301.1	PDZ domain-containing protein	-
HG564_RS00190 (HG564_00190)	comB6	32547..33602 (+)	1056	WP_202172300.1	P-type conjugative transfer protein TrbL	Machinery gene
HG564_RS00195 (HG564_00195)	comB7	33618..33731 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HG564_RS00200 (HG564_00200)	comB8	33728..34471 (+)	744	WP_202171890.1	virB8 family protein	Machinery gene
HG564_RS00205 (HG564_00205)	comB9	34471..35427 (+)	957	WP_014662053.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG564_RS00210 (HG564_00210)	comB10	35420..36556 (+)	1137	WP_001045877.1	DNA type IV secretion system protein ComB10	Machinery gene
HG564_RS00215 (HG564_00215)	-	36626..38038 (+)	1413	WP_202171891.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39683.63 Da
• Isoelectric Point: 9.0449

>NTDB_id=439238 HG564_RS00190 WP_202172300.1 32547..33602(+) (comB6) [Helicobacter pylori strain SHIM-014]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALRNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASMSGGVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439238 HG564_RS00190 WP_202172300.1 32547..33602(+) (comB6) [Helicobacter pylori strain SHIM-014]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATAACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAGAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAGCGGAGGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972