Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG564_RS00200 Genome accession   NZ_CP051503
Coordinates   33728..34471 (+) Length   247 a.a.
NCBI ID   WP_202171890.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-014     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28728..39471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS00175 (HG564_00175) panD 30890..31240 (+) 351 WP_000142269.1 aspartate 1-decarboxylase -
  HG564_RS00180 (HG564_00180) - 31251..31544 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HG564_RS00185 (HG564_00185) - 31544..32539 (+) 996 WP_202172301.1 PDZ domain-containing protein -
  HG564_RS00190 (HG564_00190) comB6 32547..33602 (+) 1056 WP_202172300.1 P-type conjugative transfer protein TrbL Machinery gene
  HG564_RS00195 (HG564_00195) comB7 33618..33731 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HG564_RS00200 (HG564_00200) comB8 33728..34471 (+) 744 WP_202171890.1 virB8 family protein Machinery gene
  HG564_RS00205 (HG564_00205) comB9 34471..35427 (+) 957 WP_014662053.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG564_RS00210 (HG564_00210) comB10 35420..36556 (+) 1137 WP_001045877.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG564_RS00215 (HG564_00215) - 36626..38038 (+) 1413 WP_202171891.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG564_RS00220 (HG564_00220) gmd 38053..39198 (+) 1146 WP_000659841.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28645.88 Da        Isoelectric Point: 8.9830

>NTDB_id=439240 HG564_RS00200 WP_202171890.1 33728..34471(+) (comB8) [Helicobacter pylori strain SHIM-014]
MKEKPFNSEQLAFLEELLSHQEKHLENKLFGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439240 HG564_RS00200 WP_202171890.1 33728..34471(+) (comB8) [Helicobacter pylori strain SHIM-014]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTTTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACAGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATCTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAACTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGTTTTAAAATCACTCGCTACAGCATCACTGAAATT
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.964