Detailed information NTG0439221

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG565_RS00215
• Genome accession: NZ_CP051502
• Coordinates: 35123..36259 (+)
• Length: 378 a.a.
• NCBI ID: WP_202169512.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30123..41259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG565_RS00180 (HG565_00180)	panD	30581..30931 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HG565_RS00185 (HG565_00185)	-	30942..31244 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG565_RS00190 (HG565_00190)	-	31244..32239 (+)	996	WP_202169987.1	PDZ domain-containing protein	-
HG565_RS00195 (HG565_00195)	comB6	32247..33302 (+)	1056	WP_202169986.1	P-type conjugative transfer protein TrbL	Machinery gene
HG565_RS00200 (HG565_00200)	comB7	33318..33431 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HG565_RS00205 (HG565_00205)	comB8	33428..34168 (+)	741	WP_202169510.1	virB8 family protein	Machinery gene
HG565_RS00210 (HG565_00210)	comB9	34168..35130 (+)	963	WP_202169511.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG565_RS00215 (HG565_00215)	comB10	35123..36259 (+)	1137	WP_202169512.1	DNA type IV secretion system protein ComB10	Machinery gene
HG565_RS00220 (HG565_00220)	-	36329..37741 (+)	1413	WP_202169513.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG565_RS00225 (HG565_00225)	gmd	37756..38901 (+)	1146	WP_202169514.1	GDP-mannose 4,6-dehydratase	-
HG565_RS00230 (HG565_00230)	-	38894..39826 (+)	933	WP_202169515.1	GDP-L-fucose synthase	-
HG565_RS00235 (HG565_00235)	hypE	40122..41120 (-)	999	WP_202169516.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42103.73 Da
• Isoelectric Point: 9.9837

>NTDB_id=439221 HG565_RS00215 WP_202169512.1 35123..36259(+) (comB10) [Helicobacter pylori strain PUNO-001]
MNKWLKGALVFAGGFATIITISLIYHQKPKTPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNAESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKVVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=439221 HG565_RS00215 WP_202169512.1 35123..36259(+) (comB10) [Helicobacter pylori strain PUNO-001]
ATGAATAAGTGGCTTAAGGGAGCACTTGTTTTTGCAGGGGGTTTTGCAACAATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAACCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACGCAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAGCAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAAC
AAACACAACTCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTATGAAGAAAACCTGATTTTCCCCATGGACAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGTAAGGTCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.974	100	0.95