Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG568_RS00210 Genome accession   NZ_CP051499
Coordinates   34340..35305 (+) Length   321 a.a.
NCBI ID   WP_202167611.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-004     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29340..40305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG568_RS00180 (HG568_00180) panD 30738..31088 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  HG568_RS00185 (HG568_00185) - 31099..31401 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HG568_RS00190 (HG568_00190) - 31401..32408 (+) 1008 WP_202168078.1 PDZ domain-containing protein -
  HG568_RS00195 (HG568_00195) comB6 32416..33471 (+) 1056 WP_202168077.1 P-type conjugative transfer protein TrbL Machinery gene
  HG568_RS00200 (HG568_00200) comB7 33487..33600 (+) 114 WP_075645715.1 comB7 lipoprotein Machinery gene
  HG568_RS00205 (HG568_00205) comB8 33597..34340 (+) 744 WP_202167610.1 virB8 family protein Machinery gene
  HG568_RS00210 (HG568_00210) comB9 34340..35305 (+) 966 WP_202167611.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG568_RS00215 (HG568_00215) comB10 35298..36434 (+) 1137 WP_202167612.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG568_RS00220 (HG568_00220) - 36504..37916 (+) 1413 WP_202167613.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG568_RS00225 (HG568_00225) gmd 37931..39076 (+) 1146 WP_202167614.1 GDP-mannose 4,6-dehydratase -
  HG568_RS00230 (HG568_00230) - 39069..40001 (+) 933 WP_202167615.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 36905.44 Da        Isoelectric Point: 9.3455

>NTDB_id=439156 HG568_RS00210 WP_202167611.1 34340..35305(+) (comB9) [Helicobacter pylori strain PUNO-004]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide


Download         Length: 966 bp        

>NTDB_id=439156 HG568_RS00210 WP_202167611.1 34340..35305(+) (comB9) [Helicobacter pylori strain PUNO-004]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCTAACACTTTGAACGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCAAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAGTGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACTAATGCGATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGAGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGCTTTATTAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.661

100

0.944