Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IPV40_RS23420 Genome accession   NZ_CP063394
Coordinates   5074253..5075695 (-) Length   480 a.a.
NCBI ID   WP_023086624.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST167_d67burn1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5069253..5080695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV40_RS23390 (IPV40_23390) - 5069579..5070694 (+) 1116 WP_003101181.1 glycosyltransferase family 1 protein -
  IPV40_RS23395 (IPV40_23395) - 5070687..5071448 (+) 762 WP_003101179.1 DUF2334 domain-containing protein -
  IPV40_RS23400 (IPV40_23400) - 5071445..5072446 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  IPV40_RS23405 (IPV40_23405) - 5072421..5072633 (-) 213 WP_003101176.1 hypothetical protein -
  IPV40_RS23410 (IPV40_23410) purU 5072683..5073534 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  IPV40_RS23415 (IPV40_23415) mvaT 5073794..5074168 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  IPV40_RS23420 (IPV40_23420) sbcB 5074253..5075695 (-) 1443 WP_023086624.1 exodeoxyribonuclease I Machinery gene
  IPV40_RS23425 (IPV40_23425) - 5075920..5076657 (+) 738 WP_003101171.1 hypothetical protein -
  IPV40_RS23430 (IPV40_23430) - 5076695..5077492 (+) 798 WP_004348090.1 RDD family protein -
  IPV40_RS23435 (IPV40_23435) - 5077489..5078469 (+) 981 WP_003093893.1 stage II sporulation protein M -
  IPV40_RS23440 (IPV40_23440) - 5078456..5080027 (+) 1572 WP_003161496.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55475.79 Da        Isoelectric Point: 5.5542

>NTDB_id=439155 IPV40_RS23420 WP_023086624.1 5074253..5075695(-) (sbcB) [Pseudomonas aeruginosa strain ST167_d67burn1]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFAASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=439155 IPV40_RS23420 WP_023086624.1 5074253..5075695(-) (sbcB) [Pseudomonas aeruginosa strain ST167_d67burn1]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCGCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44