Detailed information NTG0439153

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG568_RS00195
• Genome accession: NZ_CP051499
• Coordinates: 32416..33471 (+)
• Length: 351 a.a.
• NCBI ID: WP_202168077.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-004
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27416..38471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG568_RS00160 (HG568_00160)	-	27574..27714 (-)	141	WP_202167607.1	hypothetical protein	-
HG568_RS00165 (HG568_00165)	-	27823..28236 (+)	414	WP_001023009.1	universal stress protein	-
HG568_RS00170 (HG568_00170)	-	28251..28526 (+)	276	WP_202167608.1	ATP-dependent Clp protease adaptor ClpS	-
HG568_RS00175 (HG568_00175)	-	28526..30748 (+)	2223	WP_202167609.1	ATP-dependent Clp protease ATP-binding subunit	-
HG568_RS00180 (HG568_00180)	panD	30738..31088 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HG568_RS00185 (HG568_00185)	-	31099..31401 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG568_RS00190 (HG568_00190)	-	31401..32408 (+)	1008	WP_202168078.1	PDZ domain-containing protein	-
HG568_RS00195 (HG568_00195)	comB6	32416..33471 (+)	1056	WP_202168077.1	P-type conjugative transfer protein TrbL	Machinery gene
HG568_RS00200 (HG568_00200)	comB7	33487..33600 (+)	114	WP_075645715.1	comB7 lipoprotein	Machinery gene
HG568_RS00205 (HG568_00205)	comB8	33597..34340 (+)	744	WP_202167610.1	virB8 family protein	Machinery gene
HG568_RS00210 (HG568_00210)	comB9	34340..35305 (+)	966	WP_202167611.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG568_RS00215 (HG568_00215)	comB10	35298..36434 (+)	1137	WP_202167612.1	DNA type IV secretion system protein ComB10	Machinery gene
HG568_RS00220 (HG568_00220)	-	36504..37916 (+)	1413	WP_202167613.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39739.73 Da
• Isoelectric Point: 9.0413

>NTDB_id=439153 HG568_RS00195 WP_202168077.1 32416..33471(+) (comB6) [Helicobacter pylori strain PUNO-004]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLLLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSVNLSQNALNSLQYITTPPASSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439153 HG568_RS00195 WP_202168077.1 32416..33471(+) (comB6) [Helicobacter pylori strain PUNO-004]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTCTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTCTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTTGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGTTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGTTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCTCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966