Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HG570_RS00210 | Genome accession | NZ_CP051497 |
| Coordinates | 35213..36349 (+) | Length | 378 a.a. |
| NCBI ID | WP_202141750.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-007 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30213..41349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG570_RS00175 (HG570_00175) | panD | 30667..31017 (+) | 351 | WP_202141747.1 | aspartate 1-decarboxylase | - |
| HG570_RS00180 (HG570_00180) | - | 31028..31321 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HG570_RS00185 (HG570_00185) | - | 31321..32328 (+) | 1008 | WP_202142471.1 | PDZ domain-containing protein | - |
| HG570_RS00190 (HG570_00190) | comB6 | 32334..33389 (+) | 1056 | WP_202141748.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HG570_RS00195 (HG570_00195) | comB7 | 33405..33518 (+) | 114 | WP_001217868.1 | hypothetical protein | Machinery gene |
| HG570_RS00200 (HG570_00200) | comB8 | 33515..34258 (+) | 744 | WP_000660502.1 | virB8 family protein | Machinery gene |
| HG570_RS00205 (HG570_00205) | comB9 | 34258..35220 (+) | 963 | WP_202141749.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HG570_RS00210 (HG570_00210) | comB10 | 35213..36349 (+) | 1137 | WP_202141750.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HG570_RS00215 (HG570_00215) | - | 36419..37831 (+) | 1413 | WP_202141751.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HG570_RS00220 (HG570_00220) | gmd | 37846..38991 (+) | 1146 | WP_202141752.1 | GDP-mannose 4,6-dehydratase | - |
| HG570_RS00225 (HG570_00225) | - | 38984..39916 (+) | 933 | WP_202141753.1 | GDP-L-fucose synthase | - |
| HG570_RS00230 (HG570_00230) | hypE | 40189..41187 (-) | 999 | WP_202141754.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42250.87 Da Isoelectric Point: 9.8862
>NTDB_id=439116 HG570_RS00210 WP_202141750.1 35213..36349(+) (comB10) [Helicobacter pylori strain PUNO-007]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPSKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPSKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=439116 HG570_RS00210 WP_202141750.1 35213..36349(+) (comB10) [Helicobacter pylori strain PUNO-007]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACAATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAAC
AAACACAACCCCCTCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTATGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACAATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAAC
AAACACAACCCCCTCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTATGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.238 |
100 |
0.952 |