Detailed information NTG0439112

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG570_RS00190
• Genome accession: NZ_CP051497
• Coordinates: 32334..33389 (+)
• Length: 351 a.a.
• NCBI ID: WP_202141748.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-007
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27334..38389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG570_RS07810	-	27499..27630 (-)	132	WP_272928338.1	hypothetical protein	-
HG570_RS00160 (HG570_00160)	-	27752..28165 (+)	414	WP_001023008.1	universal stress protein	-
HG570_RS00165 (HG570_00165)	-	28180..28455 (+)	276	WP_202141745.1	ATP-dependent Clp protease adaptor ClpS	-
HG570_RS00170 (HG570_00170)	-	28455..30677 (+)	2223	WP_202141746.1	ATP-dependent Clp protease ATP-binding subunit	-
HG570_RS00175 (HG570_00175)	panD	30667..31017 (+)	351	WP_202141747.1	aspartate 1-decarboxylase	-
HG570_RS00180 (HG570_00180)	-	31028..31321 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG570_RS00185 (HG570_00185)	-	31321..32328 (+)	1008	WP_202142471.1	PDZ domain-containing protein	-
HG570_RS00190 (HG570_00190)	comB6	32334..33389 (+)	1056	WP_202141748.1	P-type conjugative transfer protein TrbL	Machinery gene
HG570_RS00195 (HG570_00195)	comB7	33405..33518 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HG570_RS00200 (HG570_00200)	comB8	33515..34258 (+)	744	WP_000660502.1	virB8 family protein	Machinery gene
HG570_RS00205 (HG570_00205)	comB9	34258..35220 (+)	963	WP_202141749.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG570_RS00210 (HG570_00210)	comB10	35213..36349 (+)	1137	WP_202141750.1	DNA type IV secretion system protein ComB10	Machinery gene
HG570_RS00215 (HG570_00215)	-	36419..37831 (+)	1413	WP_202141751.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39802.81 Da
• Isoelectric Point: 8.8165

>NTDB_id=439112 HG570_RS00190 WP_202141748.1 32334..33389(+) (comB6) [Helicobacter pylori strain PUNO-007]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSVNLSQNALNSLQYITTPPASSSVSSSMSGSVFKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439112 HG570_RS00190 WP_202141748.1 32334..33389(+) (comB6) [Helicobacter pylori strain PUNO-007]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAGAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACTTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGTTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCCTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTTTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98