Detailed information NTG0439112

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IPV40_RS07075
• Genome accession: NZ_CP063394
• Coordinates: 1517898..1518902 (+)
• Length: 334 a.a.
• NCBI ID: WP_023085982.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain ST167_d67burn1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1512898..1523902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IPV40_RS07045 (IPV40_07050)	fghA	1512990..1513841 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
IPV40_RS07050 (IPV40_07055)	ispF	1513912..1514385 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IPV40_RS07055 (IPV40_07060)	truD	1514382..1515449 (+)	1068	WP_023085981.1	tRNA pseudouridine(13) synthase TruD	-
IPV40_RS07060 (IPV40_07065)	surE	1515437..1516186 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IPV40_RS07065 (IPV40_07070)	-	1516219..1516854 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IPV40_RS07070 (IPV40_07075)	-	1516900..1517793 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
IPV40_RS07075 (IPV40_07080)	rpoS	1517898..1518902 (+)	1005	WP_023085982.1	RNA polymerase sigma factor RpoS	Regulator
IPV40_RS07080 (IPV40_07085)	fdxA	1519329..1519652 (-)	324	WP_003119354.1	ferredoxin FdxA	-
IPV40_RS07085 (IPV40_07090)	mutS	1519719..1522286 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
IPV40_RS07090 (IPV40_07095)	-	1522412..1523419 (-)	1008	WP_023085983.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38263.40 Da
• Isoelectric Point: 5.0478

>NTDB_id=439112 IPV40_RS07075 WP_023085982.1 1517898..1518902(+) (rpoS) [Pseudomonas aeruginosa strain ST167_d67burn1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRRRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=439112 IPV40_RS07075 WP_023085982.1 1517898..1518902(+) (rpoS) [Pseudomonas aeruginosa strain ST167_d67burn1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAGGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.159	98.204	0.65