Detailed information NTG0439047

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG573_RS00215
• Genome accession: NZ_CP051494
• Coordinates: 39256..40386 (+)
• Length: 376 a.a.
• NCBI ID: WP_202147356.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34256..45386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG573_RS00180 (HG573_00180)	panD	34696..35046 (+)	351	WP_000142242.1	aspartate 1-decarboxylase	-
HG573_RS00185 (HG573_00185)	-	35057..35359 (+)	303	WP_187868973.1	YbaB/EbfC family nucleoid-associated protein	-
HG573_RS00190 (HG573_00190)	-	35359..36354 (+)	996	WP_202147809.1	PDZ domain-containing protein	-
HG573_RS00195 (HG573_00195)	comB6	36362..37417 (+)	1056	WP_077367089.1	P-type conjugative transfer protein TrbL	Machinery gene
HG573_RS00200 (HG573_00200)	comB7	37433..37546 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG573_RS00205 (HG573_00205)	comB8	37543..38286 (+)	744	WP_079356717.1	virB8 family protein	Machinery gene
HG573_RS00210 (HG573_00210)	comB9	38286..39263 (+)	978	WP_202147355.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG573_RS00215 (HG573_00215)	comB10	39256..40386 (+)	1131	WP_202147356.1	DNA type IV secretion system protein ComB10	Machinery gene
HG573_RS00220 (HG573_00220)	-	40456..41868 (+)	1413	WP_202147357.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG573_RS00225 (HG573_00225)	gmd	41883..43028 (+)	1146	WP_202147358.1	GDP-mannose 4,6-dehydratase	-
HG573_RS00230 (HG573_00230)	-	43021..43953 (+)	933	WP_001943409.1	GDP-L-fucose synthase	-
HG573_RS07925	-	43984..44178 (-)	195	Protein_40	hypothetical protein	-
HG573_RS08110	-	44336..44629 (-)	294	WP_338325782.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41814.28 Da
• Isoelectric Point: 9.8255

>NTDB_id=439047 HG573_RS00215 WP_202147356.1 39256..40386(+) (comB10) [Helicobacter pylori strain PUNO-010]
MNKWLKGAVVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLAARITPFKQGPKNYEENLIFPVDNPNGIDGFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=439047 HG573_RS00215 WP_202147356.1 39256..40386(+) (comB10) [Helicobacter pylori strain PUNO-010]
GTGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACAT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAGGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGTGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCAGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.011	100	0.96