Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG573_RS00205 Genome accession   NZ_CP051494
Coordinates   37543..38286 (+) Length   247 a.a.
NCBI ID   WP_079356717.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32543..43286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG573_RS00180 (HG573_00180) panD 34696..35046 (+) 351 WP_000142242.1 aspartate 1-decarboxylase -
  HG573_RS00185 (HG573_00185) - 35057..35359 (+) 303 WP_187868973.1 YbaB/EbfC family nucleoid-associated protein -
  HG573_RS00190 (HG573_00190) - 35359..36354 (+) 996 WP_202147809.1 PDZ domain-containing protein -
  HG573_RS00195 (HG573_00195) comB6 36362..37417 (+) 1056 WP_077367089.1 P-type conjugative transfer protein TrbL Machinery gene
  HG573_RS00200 (HG573_00200) comB7 37433..37546 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG573_RS00205 (HG573_00205) comB8 37543..38286 (+) 744 WP_079356717.1 virB8 family protein Machinery gene
  HG573_RS00210 (HG573_00210) comB9 38286..39263 (+) 978 WP_202147355.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG573_RS00215 (HG573_00215) comB10 39256..40386 (+) 1131 WP_202147356.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG573_RS00220 (HG573_00220) - 40456..41868 (+) 1413 WP_202147357.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG573_RS00225 (HG573_00225) gmd 41883..43028 (+) 1146 WP_202147358.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28752.97 Da        Isoelectric Point: 8.9604

>NTDB_id=439045 HG573_RS00205 WP_079356717.1 37543..38286(+) (comB8) [Helicobacter pylori strain PUNO-010]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
VPTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439045 HG573_RS00205 WP_079356717.1 37543..38286(+) (comB8) [Helicobacter pylori strain PUNO-010]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTATTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ATAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTCTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGATGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATCTAT
GCACAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCGGCTAAACTAACGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAGATCGTATTGAGTTATCTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GTGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.381

100

0.984