Detailed information NTG0439043

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG573_RS00195
• Genome accession: NZ_CP051494
• Coordinates: 36362..37417 (+)
• Length: 351 a.a.
• NCBI ID: WP_077367089.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31362..42417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG573_RS00165 (HG573_00165)	-	31788..32201 (+)	414	WP_001023005.1	universal stress protein	-
HG573_RS00170 (HG573_00170)	-	32203..32478 (+)	276	WP_000781795.1	ATP-dependent Clp protease adaptor ClpS	-
HG573_RS00175 (HG573_00175)	-	32478..34706 (+)	2229	WP_202147354.1	ATP-dependent Clp protease ATP-binding subunit	-
HG573_RS00180 (HG573_00180)	panD	34696..35046 (+)	351	WP_000142242.1	aspartate 1-decarboxylase	-
HG573_RS00185 (HG573_00185)	-	35057..35359 (+)	303	WP_187868973.1	YbaB/EbfC family nucleoid-associated protein	-
HG573_RS00190 (HG573_00190)	-	35359..36354 (+)	996	WP_202147809.1	PDZ domain-containing protein	-
HG573_RS00195 (HG573_00195)	comB6	36362..37417 (+)	1056	WP_077367089.1	P-type conjugative transfer protein TrbL	Machinery gene
HG573_RS00200 (HG573_00200)	comB7	37433..37546 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG573_RS00205 (HG573_00205)	comB8	37543..38286 (+)	744	WP_079356717.1	virB8 family protein	Machinery gene
HG573_RS00210 (HG573_00210)	comB9	38286..39263 (+)	978	WP_202147355.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG573_RS00215 (HG573_00215)	comB10	39256..40386 (+)	1131	WP_202147356.1	DNA type IV secretion system protein ComB10	Machinery gene
HG573_RS00220 (HG573_00220)	-	40456..41868 (+)	1413	WP_202147357.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39667.56 Da
• Isoelectric Point: 9.0413

>NTDB_id=439043 HG573_RS00195 WP_077367089.1 36362..37417(+) (comB6) [Helicobacter pylori strain PUNO-010]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439043 HG573_RS00195 WP_077367089.1 36362..37417(+) (comB6) [Helicobacter pylori strain PUNO-010]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTGTTTAATTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTAAGCGTTCTG
TTTGCGATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGTTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963