Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HG579_RS01775 Genome accession   NZ_CP051493
Coordinates   369599..370399 (+) Length   266 a.a.
NCBI ID   WP_202134107.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-006     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 364599..375399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS01740 (HG579_01735) pseH 365099..365641 (+) 543 WP_202134103.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HG579_RS01745 (HG579_01740) - 365574..366512 (-) 939 WP_202134104.1 tetraacyldisaccharide 4'-kinase -
  HG579_RS01750 (HG579_01745) - 366509..367291 (-) 783 WP_202134105.1 NAD+ synthase -
  HG579_RS01760 (HG579_01755) ilvC 367540..368532 (+) 993 WP_202134106.1 ketol-acid reductoisomerase -
  HG579_RS01765 (HG579_01760) minD 368556..369362 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  HG579_RS01770 (HG579_01765) minE 369359..369592 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG579_RS01775 (HG579_01770) dprA 369599..370399 (+) 801 WP_202134107.1 DNA-processing protein DprA Machinery gene
  HG579_RS01780 (HG579_01775) dprB 370396..370800 (+) 405 WP_097688583.1 Holliday junction resolvase RuvX Machinery gene
  HG579_RS01785 (HG579_01780) - 371078..371869 (+) 792 WP_202134108.1 tetratricopeptide repeat protein -
  HG579_RS01790 (HG579_01785) - 372056..372394 (+) 339 WP_000699891.1 hypothetical protein -
  HG579_RS01795 (HG579_01790) - 372378..372938 (+) 561 WP_202134109.1 hypothetical protein -
  HG579_RS01800 (HG579_01795) - 373082..373963 (-) 882 WP_202134110.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29835.64 Da        Isoelectric Point: 6.9617

>NTDB_id=439027 HG579_RS01775 WP_202134107.1 369599..370399(+) (dprA) [Helicobacter pylori strain LIM-006]
MKSHFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPTTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMEDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=439027 HG579_RS01775 WP_202134107.1 369599..370399(+) (dprA) [Helicobacter pylori strain LIM-006]
ATGAAAAGCCATTTCCAATACAGCACGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCTCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTGGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAACAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACGAA
TAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTACAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAGCCCTTATTTGTTTTGCCCCAGCGTTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTGCGCCAAAAACCCTAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCACATTGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.744

100

0.977
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41