Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG579_RS01780 Genome accession   NZ_CP051493
Coordinates   370396..370800 (+) Length   134 a.a.
NCBI ID   WP_097688583.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 365396..375800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS01745 (HG579_01740) - 365574..366512 (-) 939 WP_202134104.1 tetraacyldisaccharide 4'-kinase -
  HG579_RS01750 (HG579_01745) - 366509..367291 (-) 783 WP_202134105.1 NAD+ synthase -
  HG579_RS01760 (HG579_01755) ilvC 367540..368532 (+) 993 WP_202134106.1 ketol-acid reductoisomerase -
  HG579_RS01765 (HG579_01760) minD 368556..369362 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  HG579_RS01770 (HG579_01765) minE 369359..369592 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG579_RS01775 (HG579_01770) dprA 369599..370399 (+) 801 WP_202134107.1 DNA-processing protein DprA Machinery gene
  HG579_RS01780 (HG579_01775) dprB 370396..370800 (+) 405 WP_097688583.1 Holliday junction resolvase RuvX Machinery gene
  HG579_RS01785 (HG579_01780) - 371078..371869 (+) 792 WP_202134108.1 tetratricopeptide repeat protein -
  HG579_RS01790 (HG579_01785) - 372056..372394 (+) 339 WP_000699891.1 hypothetical protein -
  HG579_RS01795 (HG579_01790) - 372378..372938 (+) 561 WP_202134109.1 hypothetical protein -
  HG579_RS01800 (HG579_01795) - 373082..373963 (-) 882 WP_202134110.1 RluA family pseudouridine synthase -
  HG579_RS01805 (HG579_01800) recJ 373963..375513 (-) 1551 WP_202134111.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15191.58 Da        Isoelectric Point: 8.2836

>NTDB_id=439028 HG579_RS01780 WP_097688583.1 370396..370800(+) (dprB) [Helicobacter pylori strain LIM-006]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKSIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439028 HG579_RS01780 WP_097688583.1 370396..370800(+) (dprB) [Helicobacter pylori strain LIM-006]
ATGATTTTAGCGTGCGATGTGGGGCTAAAACGCATTGGAATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTGGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAGCATTCAGGTGCTAGTGG
TGGGCAAACCCAATGAAAGCTATGCGGATACGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963