Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HGP31_RS26910 Genome accession   NZ_CP051487
Coordinates   5947634..5948965 (+) Length   443 a.a.
NCBI ID   WP_168758962.1    Uniprot ID   A0AAE6ZYP9
Organism   Pseudomonas umsongensis strain CY-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5942634..5953965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGP31_RS26885 (HGP31_26885) pgeF 5942800..5943552 (-) 753 WP_020798625.1 peptidoglycan editing factor PgeF -
  HGP31_RS26890 (HGP31_26890) rluD 5943549..5944511 (-) 963 WP_033040377.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HGP31_RS26895 (HGP31_26895) - 5944663..5945685 (+) 1023 WP_020798627.1 outer membrane protein assembly factor BamD -
  HGP31_RS26900 (HGP31_26900) - 5945822..5946055 (+) 234 WP_033040380.1 PP0621 family protein -
  HGP31_RS26905 (HGP31_26905) pilS 5946045..5947631 (+) 1587 WP_020798630.1 sensor histidine kinase Regulator
  HGP31_RS26910 (HGP31_26910) pilR 5947634..5948965 (+) 1332 WP_168758962.1 sigma-54-dependent transcriptional regulator Regulator
  HGP31_RS26915 (HGP31_26915) thiO 5949068..5950168 (-) 1101 WP_168758963.1 glycine oxidase ThiO -
  HGP31_RS26920 (HGP31_26920) - 5950224..5950625 (-) 402 WP_033040385.1 type IV pilin protein -
  HGP31_RS26925 (HGP31_26925) - 5950640..5952472 (-) 1833 Protein_5348 pilus assembly protein -
  HGP31_RS26930 (HGP31_26930) - 5952576..5953046 (-) 471 WP_033040389.1 pilus assembly PilX family protein -
  HGP31_RS26935 (HGP31_26935) - 5953058..5953777 (-) 720 WP_020798636.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49497.97 Da        Isoelectric Point: 7.7007

>NTDB_id=438964 HGP31_RS26910 WP_168758962.1 5947634..5948965(+) (pilR) [Pseudomonas umsongensis strain CY-1]
MSPRKKVLVVDDEPDIRELLEITLGRMKLDTYSARNVGEALALLQRETFDLCLTDMRLPDGSGLVLVQHIQQRYPQIPVA
MITAYGNLDTAINALKAGAFDFLTKPVDLTRLRKLVTSALLLPAPGTTIDRRLLGDSPPMRNLRQQIDKLARSQAPVYIS
GESGSGKELVARLIHERGPRANQPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLP
MQVKLLRAIQEKAVRSVGGQQERVVDVRILCATHKDLGAEVAGERFRQDLYYRLNVIELRVPPLRERRDDIEPLACHVLK
RLAADTGQPAAKLHPNALDALKSYRFPGNVRELENMLERAHTLCENNRIEASDLRLAEGNCSAEGGVPDLTQIDNLEAYL
ENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=438964 HGP31_RS26910 WP_168758962.1 5947634..5948965(+) (pilR) [Pseudomonas umsongensis strain CY-1]
ATGAGCCCACGGAAAAAAGTTCTGGTCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACTTACAGTGCCCGTAACGTTGGCGAGGCCTTGGCCCTGCTCCAGCGCGAGACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGATGGCAGCGGTCTTGTGCTGGTGCAACACATCCAGCAACGCTATCCACAGATTCCGGTGGCC
ATGATCACCGCCTATGGCAACCTCGATACGGCGATCAATGCGCTGAAGGCCGGCGCTTTCGACTTCCTGACCAAGCCGGT
GGACCTGACCCGCTTGCGGAAACTGGTCACCAGTGCCTTGCTGTTACCCGCCCCTGGGACCACCATCGATCGCCGCTTGC
TAGGCGACTCGCCGCCCATGCGCAATCTGCGCCAGCAGATCGACAAGCTGGCCCGCAGCCAGGCTCCGGTGTACATCAGT
GGCGAGTCCGGCAGTGGCAAGGAACTGGTCGCCCGCCTGATTCATGAGCGAGGACCACGGGCCAACCAGCCCTTTGTCCC
GGTCAATTGCGGCGCGATTCCGACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCAGCTTCAGCGGCGCCA
TCGAGGACAAGCCCGGATTGTTCCAGGCGGCCCACGGCGGCACCCTGTTTCTCGACGAAGTGGCAGACCTGCCTCTGCCC
ATGCAGGTCAAACTGCTGCGGGCGATCCAGGAGAAAGCCGTACGCAGCGTCGGTGGGCAACAGGAAAGGGTGGTTGATGT
GCGCATACTGTGCGCCACCCACAAAGACCTTGGCGCCGAAGTCGCCGGCGAACGTTTTCGCCAGGATCTGTACTACCGCC
TGAACGTGATCGAACTACGCGTGCCACCGTTGCGCGAACGCCGTGACGACATCGAGCCGCTGGCCTGCCATGTGCTCAAG
CGCCTGGCTGCAGACACCGGGCAGCCCGCGGCAAAACTCCACCCCAATGCCCTCGACGCCCTGAAAAGCTACCGTTTTCC
GGGCAATGTGCGGGAGCTGGAGAATATGCTCGAACGCGCTCACACCTTATGCGAAAACAACCGGATCGAGGCCAGCGACC
TGCGCCTGGCCGAGGGCAACTGCTCCGCCGAAGGGGGCGTGCCGGACCTCACGCAGATCGATAACCTGGAGGCGTACCTG
GAAAACGTTGAGCGCCAACTGCTTCTCCAGGCCCTGGAAGAGACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGTTGAA
TCTGTCGTTTCGGTCGATGCGCTACAGGCTGAAGAAATTAGGGTTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

100

0.781
  pilR Acinetobacter baumannii strain A118

49.783

100

0.517