Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HGP31_RS26905 Genome accession   NZ_CP051487
Coordinates   5946045..5947631 (+) Length   528 a.a.
NCBI ID   WP_020798630.1    Uniprot ID   S2FLP8
Organism   Pseudomonas umsongensis strain CY-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5941045..5952631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGP31_RS26885 (HGP31_26885) pgeF 5942800..5943552 (-) 753 WP_020798625.1 peptidoglycan editing factor PgeF -
  HGP31_RS26890 (HGP31_26890) rluD 5943549..5944511 (-) 963 WP_033040377.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HGP31_RS26895 (HGP31_26895) - 5944663..5945685 (+) 1023 WP_020798627.1 outer membrane protein assembly factor BamD -
  HGP31_RS26900 (HGP31_26900) - 5945822..5946055 (+) 234 WP_033040380.1 PP0621 family protein -
  HGP31_RS26905 (HGP31_26905) pilS 5946045..5947631 (+) 1587 WP_020798630.1 sensor histidine kinase Regulator
  HGP31_RS26910 (HGP31_26910) pilR 5947634..5948965 (+) 1332 WP_168758962.1 sigma-54-dependent transcriptional regulator Regulator
  HGP31_RS26915 (HGP31_26915) thiO 5949068..5950168 (-) 1101 WP_168758963.1 glycine oxidase ThiO -
  HGP31_RS26920 (HGP31_26920) - 5950224..5950625 (-) 402 WP_033040385.1 type IV pilin protein -
  HGP31_RS26925 (HGP31_26925) - 5950640..5952472 (-) 1833 Protein_5348 pilus assembly protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 58624.56 Da        Isoelectric Point: 7.1908

>NTDB_id=438963 HGP31_RS26905 WP_020798630.1 5946045..5947631(+) (pilS) [Pseudomonas umsongensis strain CY-1]
MIAETSSPGEKQAQRLLRLYHLYRLSIGITLVLLISSNLDNRLLTAANDDLLRSGSWLYLVLNILLAVFFQSTRRPTQLL
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRKRIGLLIAAISTLGILGSSFLLNVSHRANPNDYLQVGTLG
VLCFAAALLVQGLIRRLEVSETLVQQKASEVVGLEALNALILQRMRTGILVLDDQWRVQLANHGALTLLGCERLEGQRID
EHAPALVERLQLWINNPTLRPQSLKIARSGLELQPSFIALSSSPHRQTLVFLEDLAQITQQAHQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNAADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTATQRLDLRPWLEQFVAATRDQASEH
QKIHLRIAPGDFETLMDPNQLEQILDNLIGNAWRHSALDHDPAQVWLELFTDPESQLPVLEILDDGPGVAPDHQAQLFEP
FFTTSQQGTGLGLYLSRELCESNQARLDFKPRQGGCFRITFAHGRKQG

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=438963 HGP31_RS26905 WP_020798630.1 5946045..5947631(+) (pilS) [Pseudomonas umsongensis strain CY-1]
GTGATCGCTGAGACGTCCAGTCCCGGCGAAAAACAGGCCCAGCGACTGCTGCGTCTCTATCACCTCTACCGTTTAAGCAT
CGGCATCACCTTGGTATTGCTGATTTCCAGCAACCTGGACAACCGCTTGCTTACGGCCGCCAATGACGACCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGCAGTCTTCTTCCAGAGCACCCGACGCCCGACGCAACTGCTC
AGCCTGGCTCTGGTCGACGTCCTGCTGCTTTGCGGGTTGTTCTACGCCGCTGGCGGAGTGGCCAGCGCTATTGGCAACTT
GCTGATCGTCTCGGTGGCCATCAGCAATACCTTGTTGCGAAAACGCATCGGCTTGCTCATTGCCGCCATCAGCACACTTG
GCATCCTGGGTTCGAGCTTCCTGCTGAATGTCAGCCATCGTGCCAATCCCAACGATTATTTGCAGGTCGGCACGCTTGGC
GTGCTGTGTTTTGCCGCGGCGCTGCTGGTACAGGGCCTGATCCGACGACTGGAAGTCAGCGAAACCCTGGTGCAACAGAA
GGCCAGCGAAGTGGTTGGCCTGGAAGCCCTCAATGCACTGATCCTGCAACGCATGCGTACTGGCATCCTGGTGCTTGATG
ACCAATGGCGCGTGCAACTGGCCAATCATGGCGCCTTGACCCTGCTGGGCTGCGAGCGCCTCGAAGGCCAACGAATTGAC
GAACATGCACCTGCCCTGGTCGAGCGCCTGCAACTGTGGATCAACAATCCGACGCTGCGCCCGCAAAGCCTGAAAATCGC
CCGTAGCGGCCTTGAACTACAGCCAAGCTTCATCGCCCTGTCCTCCAGCCCACACCGCCAGACCCTGGTCTTTCTCGAAG
ACCTCGCACAGATCACCCAGCAGGCTCACCAACTGAAGCTCGCCGCCCTGGGTCGCCTGACCGCCGGTATTGCCCATGAA
ATCCGCAATCCGTTGGGCGCCATCAGTCACGCCGCGCAGCTATTGCGAGAATCGGAGGAACTGAATGCCGCGGACCGGCG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGCATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGCGACCCAACGACTCGACCTGAGGCCTTGGCTGGAACAGTTCGTGGCGGCAACCCGCGACCAGGCGAGCGAGCAC
CAGAAAATCCATCTGCGCATTGCGCCCGGTGACTTCGAGACCTTGATGGACCCGAACCAGCTGGAGCAGATTCTCGACAA
CCTGATAGGCAATGCCTGGCGCCATAGCGCCCTGGACCACGACCCGGCGCAGGTCTGGCTTGAATTGTTCACCGATCCCG
AAAGCCAGCTTCCGGTCCTCGAAATCCTCGACGACGGCCCCGGAGTGGCCCCGGATCATCAAGCACAACTGTTTGAGCCC
TTCTTCACCACCAGCCAACAGGGCACTGGCCTGGGGCTATACCTGTCACGTGAGCTGTGCGAGAGCAACCAGGCTCGCCT
GGACTTCAAACCACGCCAAGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGCAAACAAGGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S2FLP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.902

100

0.589