Detailed information NTG0438958

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HGP31_RS24035
• Genome accession: NZ_CP051487
• Coordinates: 5344683..5346917 (-)
• Length: 744 a.a.
• NCBI ID: WP_020799917.1
• Uniprot ID: S2ER16
• Organism: Pseudomonas umsongensis strain CY-1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5339683..5351917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGP31_RS24000 (HGP31_24000)	murB	5340062..5341081 (-)	1020	WP_033044088.1	UDP-N-acetylmuramate dehydrogenase	-
HGP31_RS24005 (HGP31_24005)	-	5341078..5341542 (-)	465	WP_020799922.1	low molecular weight protein-tyrosine-phosphatase	-
HGP31_RS24010 (HGP31_24010)	kdsB	5341542..5342306 (-)	765	WP_020799921.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HGP31_RS24015 (HGP31_24015)	-	5342303..5342488 (-)	186	WP_003179363.1	Trm112 family protein	-
HGP31_RS24020 (HGP31_24020)	lpxK	5342514..5343518 (-)	1005	WP_020799920.1	tetraacyldisaccharide 4'-kinase	-
HGP31_RS24025 (HGP31_24025)	-	5343524..5343952 (-)	429	WP_168758799.1	ExbD/TolR family protein	-
HGP31_RS24030 (HGP31_24030)	exbB	5343949..5344584 (-)	636	WP_020799918.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HGP31_RS24035 (HGP31_24035)	comA	5344683..5346917 (-)	2235	WP_020799917.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HGP31_RS24040 (HGP31_24040)	-	5347054..5347569 (+)	516	WP_020799916.1	DUF2062 domain-containing protein	-
HGP31_RS24045 (HGP31_24045)	-	5347957..5348736 (-)	780	WP_020799677.1	ABC transporter permease	-
HGP31_RS24050 (HGP31_24050)	-	5348733..5349665 (-)	933	WP_020799678.1	ABC transporter ATP-binding protein	-
HGP31_RS24055 (HGP31_24055)	-	5349798..5350421 (-)	624	WP_020799679.1	glutathione S-transferase family protein	-
HGP31_RS24060 (HGP31_24060)	-	5350465..5351124 (-)	660	WP_168758800.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82022.33 Da
• Isoelectric Point: 10.4363

>NTDB_id=438958 HGP31_RS24035 WP_020799917.1 5344683..5346917(-) (comA) [Pseudomonas umsongensis strain CY-1]
MRTGMMALALGLLALRFLPVLPPVWLWLLMPVAGLMLLPFRTYPAAFFLFGLSWACAHAQWALDDRLSPALDGETRWVEG
RVSGLPQNGEGVVRFELTDSRSRRTDLPRQLRLAWYDGPPVNSGERWRLAVKLKRPVGLLNPHAFDYEAWLLAQRIGATG
TVKAGERLAPARWAWRDGIRQRLQAVDAQGRTGVLVALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHVGLLAGLVYLL
IAGLARYGLWPARLPWLPWACSLAFVAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALNGVLLMDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWPWWQTWTRAQWLIAIGLGPFLLVLGLPISLSGPLVNLLAVPWISLVVLPPAL
LGTLLLPVPYVGEWLLWLAGGLIDWLFTGLALVAGKVPAWVPAAIPLWVWAIGTLGAFLLLLPRGVPMRPLGWPLLLLLV
FPPRPVLPEGIAEVWQLDVGQGLAIMVRTRHHTLLYDAGPRLRGLDQGERVVLPALRKLGVKALDLMLISHAHADHAGGA
RAVANGLPVKRVLSGEPADLPGELQAEGCESGRQWTWDGVNFQLWHWPQARDSNQNSCVLQIEANGERLLLSGDIDTHAE
RALLASPLAVPTDWLQSPHHGSRSSSSMALLNVLQPKAALISRGQGNSFGHPHPVVIERYRHRAMDIYDSAQQGAVHLQL
GRFEPPRSMRQERRFWRDPPPSGK

Nucleotide

• Length: 2235 bp

>NTDB_id=438958 HGP31_RS24035 WP_020799917.1 5344683..5346917(-) (comA) [Pseudomonas umsongensis strain CY-1]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGCTTGCTGGCCTTGCGTTTTTTACCGGTGTTACCGCCGGTCTGGTTGTG
GTTGTTGATGCCGGTGGCAGGCTTGATGTTGCTGCCGTTCAGGACGTATCCGGCTGCGTTTTTCCTGTTCGGCTTGAGTT
GGGCCTGTGCCCATGCCCAATGGGCCCTGGATGATCGGCTGTCGCCGGCCCTCGACGGGGAAACGCGTTGGGTCGAAGGG
CGTGTCAGCGGGCTGCCACAGAATGGTGAGGGGGTGGTGCGTTTCGAACTGACTGACAGTCGGTCACGCCGTACCGACCT
GCCGCGACAGTTGCGTCTGGCCTGGTATGACGGTCCGCCGGTAAACAGCGGCGAACGCTGGCGGCTCGCGGTCAAGCTGA
AGCGACCCGTGGGGTTGCTCAATCCGCATGCCTTCGACTATGAGGCCTGGCTGTTGGCGCAACGCATCGGTGCGACCGGG
ACGGTCAAGGCCGGGGAGCGGCTTGCACCAGCCCGGTGGGCCTGGCGCGACGGTATCCGCCAGAGGCTGCAGGCCGTGGA
TGCGCAAGGTCGAACTGGCGTGCTGGTTGCGCTGGTGCTGGGAGACGGCGCGGGGCTCAGCCGCGAAGACTGGCAGGTGT
TGCAAGACACTGGCACCGTGCACCTGTTGGTGATTTCCGGGCAGCACGTCGGCTTGTTGGCGGGACTGGTTTATCTGTTG
ATCGCCGGGCTTGCCCGTTACGGCTTGTGGCCAGCCCGTCTACCATGGTTGCCTTGGGCCTGCAGCCTGGCTTTCGTGGC
CGCCCTTGGCTATGGGCTGCTGGCTGGCTTCGAAGTGCCGGTCCGCCGAGCCTGCCTGATGATCGGCCTGGTGCTGCTAT
GGCGCCTGCGTTTTCGCCACCTGGGTGCCTGGTGGCCACTGTTGCTGGCGCTCAATGGCGTCTTGCTGATGGACCCGTTG
GCGAGTCTGCAACCGGGGTTCTGGCTGTCCTTCGCGGCGGTGGCGGTGCTTATCTTCACGTTCGGTGGGCGCCTGGGGCC
TTGGCCATGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGATCGCTATTGGCCTTGGACCGTTTTTGCTGGTCCTGGGAT
TGCCGATCAGCCTTAGCGGGCCGCTGGTCAATCTGCTGGCGGTACCCTGGATCAGCCTGGTGGTGCTGCCCCCTGCGTTG
CTCGGTACACTTTTGCTGCCGGTGCCCTACGTCGGCGAGTGGCTGCTGTGGCTGGCGGGCGGCTTGATAGATTGGCTGTT
CACCGGGTTGGCATTGGTCGCCGGCAAGGTTCCCGCCTGGGTGCCCGCGGCCATTCCGCTATGGGTCTGGGCCATCGGCA
CGCTGGGCGCCTTTTTGTTGCTGCTGCCGCGTGGCGTACCGATGCGACCGTTAGGCTGGCCTTTGCTGTTACTACTGGTT
TTTCCTCCGCGGCCGGTGCTGCCCGAAGGCATTGCCGAGGTCTGGCAACTGGATGTGGGTCAAGGGCTGGCGATCATGGT
GCGCACGCGCCATCACACACTGTTATATGACGCCGGTCCGCGTTTGCGTGGTCTTGACCAGGGTGAGCGGGTGGTCCTGC
CCGCACTGCGCAAGCTGGGTGTGAAGGCGCTCGACCTGATGTTGATCAGCCATGCCCATGCCGATCATGCCGGTGGCGCC
CGGGCAGTGGCCAATGGATTGCCGGTGAAACGGGTGCTCAGTGGCGAACCTGCCGACCTGCCTGGCGAGTTGCAGGCCGA
GGGCTGTGAGAGCGGTCGGCAGTGGACGTGGGACGGGGTCAACTTTCAACTGTGGCACTGGCCGCAGGCCAGGGACAGCA
ACCAGAACTCCTGTGTGTTGCAGATCGAAGCCAATGGCGAGCGATTGCTGCTCAGCGGTGACATCGACACCCACGCCGAG
CGCGCGTTGCTCGCCAGCCCATTGGCCGTGCCTACCGATTGGTTGCAGTCACCGCACCACGGTAGTCGCAGTTCGTCGTC
GATGGCGCTGCTCAACGTTCTACAGCCCAAGGCAGCACTGATTTCCCGTGGACAGGGCAACTCCTTCGGTCATCCTCATC
CGGTGGTGATTGAGCGCTATCGACATCGCGCGATGGACATCTACGACAGTGCGCAGCAAGGCGCCGTTCATCTGCAACTG
GGGCGTTTCGAACCACCGCGCTCGATGCGTCAAGAACGGCGCTTCTGGCGCGATCCCCCACCCTCGGGCAAATAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-682)

• Competence protein (Competence) (198-464)

3D structure

• AlphaFold DB: S2ER16

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.128	96.237	0.608
comA	Ralstonia pseudosolanacearum GMI1000	33.769	100	0.382