Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HGP31_RS24030 Genome accession   NZ_CP051487
Coordinates   5343949..5344584 (-) Length   211 a.a.
NCBI ID   WP_020799918.1    Uniprot ID   S2EWZ7
Organism   Pseudomonas umsongensis strain CY-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5338949..5349584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGP31_RS23995 (HGP31_23995) - 5339343..5339813 (-) 471 WP_020799924.1 (2Fe-2S)-binding protein -
  HGP31_RS24000 (HGP31_24000) murB 5340062..5341081 (-) 1020 WP_033044088.1 UDP-N-acetylmuramate dehydrogenase -
  HGP31_RS24005 (HGP31_24005) - 5341078..5341542 (-) 465 WP_020799922.1 low molecular weight protein-tyrosine-phosphatase -
  HGP31_RS24010 (HGP31_24010) kdsB 5341542..5342306 (-) 765 WP_020799921.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HGP31_RS24015 (HGP31_24015) - 5342303..5342488 (-) 186 WP_003179363.1 Trm112 family protein -
  HGP31_RS24020 (HGP31_24020) lpxK 5342514..5343518 (-) 1005 WP_020799920.1 tetraacyldisaccharide 4'-kinase -
  HGP31_RS24025 (HGP31_24025) - 5343524..5343952 (-) 429 WP_168758799.1 ExbD/TolR family protein -
  HGP31_RS24030 (HGP31_24030) exbB 5343949..5344584 (-) 636 WP_020799918.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HGP31_RS24035 (HGP31_24035) comA 5344683..5346917 (-) 2235 WP_020799917.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HGP31_RS24040 (HGP31_24040) - 5347054..5347569 (+) 516 WP_020799916.1 DUF2062 domain-containing protein -
  HGP31_RS24045 (HGP31_24045) - 5347957..5348736 (-) 780 WP_020799677.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.12 Da        Isoelectric Point: 7.3617

>NTDB_id=438957 HGP31_RS24030 WP_020799918.1 5343949..5344584(-) (exbB) [Pseudomonas umsongensis strain CY-1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=438957 HGP31_RS24030 WP_020799918.1 5343949..5344584(-) (exbB) [Pseudomonas umsongensis strain CY-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCGGCAATGGCTATCGTTGC
CGAACGTCTGTGGACCCTGCGGGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTTAACAAGGAGAAGCTCAAGGAACTGCGCGCCAATTCGCCGTTGGGCGAGATCCTGGCCGCTGGCCTGGCGAAC
TCCCGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATCCATGAGCTGGAACGCTACAT
CAATGCCCTCGGTACCATCGCTGCCATGGCGCCATTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGACCACCAATGCGGCGGTACTGGCCGGGGGTATCTCCAAAGCGCTGATCACCACGGCC
GCCGGCTTGATGGTCGGTATCCCGTCGGTATTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTCGTGCAGGGTGACCGTGACGTGGACCTGGCGGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S2EWZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844