Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HGO94_RS13860 | Genome accession | NZ_CP051483 |
| Coordinates | 2794406..2794876 (+) | Length | 156 a.a. |
| NCBI ID | WP_138076570.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NGA66a | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2765698..2801384 | 2794406..2794876 | within | 0 |
Gene organization within MGE regions
Location: 2765698..2801384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGO94_RS13670 (HGO94_10725) | - | 2765698..2766324 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| HGO94_RS13675 (HGO94_10730) | - | 2766521..2767702 (+) | 1182 | WP_000120303.1 | SdrH family protein | - |
| HGO94_RS13680 (HGO94_10735) | mroQ | 2767727..2768470 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| HGO94_RS13685 (HGO94_10740) | groES | 2768645..2768929 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| HGO94_RS13690 (HGO94_10745) | groL | 2769005..2770621 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| HGO94_RS13695 (HGO94_10750) | - | 2770716..2771262 (-) | 547 | Protein_2659 | site-specific integrase | - |
| HGO94_RS13700 (HGO94_10755) | - | 2771323..2771535 (+) | 213 | WP_000128898.1 | hypothetical protein | - |
| HGO94_RS13705 (HGO94_10760) | - | 2771532..2772122 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| HGO94_RS13710 (HGO94_10765) | - | 2772439..2772876 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| HGO94_RS13715 (HGO94_10770) | - | 2772982..2773425 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| HGO94_RS13720 (HGO94_10775) | - | 2774279..2775586 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| HGO94_RS13725 (HGO94_10780) | - | 2775747..2776658 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| HGO94_RS13730 (HGO94_10785) | - | 2776720..2777565 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| HGO94_RS13735 (HGO94_10790) | - | 2777937..2779160 (-) | 1224 | WP_000206623.1 | ArgE/DapE family deacylase | - |
| HGO94_RS13740 (HGO94_10795) | lukH | 2779596..2780648 (+) | 1053 | WP_000791417.1 | bi-component leukocidin LukGH subunit H | - |
| HGO94_RS13745 (HGO94_10800) | lukG | 2780670..2781686 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| HGO94_RS13750 (HGO94_10805) | sph | 2781924..2782754 (-) | 831 | Protein_2670 | sphingomyelin phosphodiesterase | - |
| HGO94_RS13755 (HGO94_10810) | - | 2782805..2783842 (-) | 1038 | WP_000857191.1 | site-specific integrase | - |
| HGO94_RS13760 (HGO94_10815) | - | 2783901..2784365 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| HGO94_RS13765 (HGO94_10820) | - | 2784465..2784647 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| HGO94_RS13770 (HGO94_10825) | - | 2784692..2785549 (-) | 858 | WP_000804507.1 | HIRAN domain-containing protein | - |
| HGO94_RS13775 (HGO94_10830) | - | 2785561..2786277 (-) | 717 | WP_001083967.1 | LexA family transcriptional regulator | - |
| HGO94_RS13780 (HGO94_10835) | - | 2786441..2786683 (+) | 243 | WP_000639927.1 | DUF739 family protein | - |
| HGO94_RS13785 (HGO94_10840) | - | 2786697..2786957 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| HGO94_RS13790 (HGO94_10845) | - | 2786981..2787520 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| HGO94_RS13795 (HGO94_10850) | - | 2787577..2788332 (+) | 756 | WP_001148342.1 | phage antirepressor KilAC domain-containing protein | - |
| HGO94_RS13800 (HGO94_10855) | - | 2788348..2788542 (+) | 195 | WP_001566738.1 | hypothetical protein | - |
| HGO94_RS13805 (HGO94_10860) | - | 2788537..2788893 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| HGO94_RS13810 (HGO94_10865) | - | 2788943..2789134 (+) | 192 | WP_000389905.1 | hypothetical protein | - |
| HGO94_RS13815 (HGO94_10870) | - | 2789136..2789363 (-) | 228 | WP_000801108.1 | hypothetical protein | - |
| HGO94_RS13820 (HGO94_10875) | - | 2789422..2789742 (+) | 321 | WP_249741395.1 | DUF771 domain-containing protein | - |
| HGO94_RS13825 (HGO94_10880) | - | 2789739..2789897 (+) | 159 | WP_249741396.1 | DUF1270 family protein | - |
| HGO94_RS13830 (HGO94_10885) | - | 2789994..2790296 (+) | 303 | WP_044131919.1 | DUF2482 family protein | - |
| HGO94_RS13835 (HGO94_10890) | - | 2790301..2790561 (+) | 261 | WP_031763794.1 | DUF1108 family protein | - |
| HGO94_RS13840 (HGO94_10895) | - | 2790570..2790833 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| HGO94_RS13845 (HGO94_10900) | - | 2790830..2792785 (+) | 1956 | WP_048657537.1 | AAA family ATPase | - |
| HGO94_RS13850 (HGO94_10905) | - | 2792787..2793707 (+) | 921 | WP_000138479.1 | recombinase RecT | - |
| HGO94_RS13855 (HGO94_10910) | - | 2793788..2794405 (+) | 618 | WP_249741440.1 | MBL fold metallo-hydrolase | - |
| HGO94_RS13860 (HGO94_10915) | ssbA | 2794406..2794876 (+) | 471 | WP_138076570.1 | single-stranded DNA-binding protein | Machinery gene |
| HGO94_RS13865 (HGO94_10920) | - | 2794906..2795790 (+) | 885 | WP_047213628.1 | DnaD domain protein | - |
| HGO94_RS13870 (HGO94_10925) | - | 2795797..2796015 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| HGO94_RS13875 (HGO94_10930) | - | 2796024..2796428 (+) | 405 | WP_249741397.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HGO94_RS13880 (HGO94_10935) | - | 2796441..2796809 (+) | 369 | WP_249741398.1 | SA1788 family PVL leukocidin-associated protein | - |
| HGO94_RS13885 (HGO94_10940) | - | 2796813..2797055 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| HGO94_RS13890 (HGO94_10945) | - | 2797120..2797569 (+) | 450 | WP_031900917.1 | YopX family protein | - |
| HGO94_RS13895 (HGO94_10950) | - | 2797566..2798075 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| HGO94_RS13900 (HGO94_10955) | - | 2798072..2798482 (+) | 411 | WP_054193060.1 | hypothetical protein | - |
| HGO94_RS13905 (HGO94_10960) | - | 2798475..2799011 (+) | 537 | WP_001066444.1 | dUTPase | - |
| HGO94_RS13910 (HGO94_10965) | - | 2799048..2799254 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| HGO94_RS13915 (HGO94_10970) | - | 2799251..2799400 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| HGO94_RS13920 (HGO94_10975) | - | 2799559..2800209 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| HGO94_RS13925 (HGO94_10980) | - | 2800209..2800409 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| HGO94_RS13930 (HGO94_10985) | - | 2800437..2800853 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| HGO94_RS13935 (HGO94_10990) | - | 2801085..2801384 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17653.57 Da Isoelectric Point: 5.2672
>NTDB_id=438892 HGO94_RS13860 WP_138076570.1 2794406..2794876(+) (ssbA) [Staphylococcus aureus strain NGA66a]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVFVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVFVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=438892 HGO94_RS13860 WP_138076570.1 2794406..2794876(+) (ssbA) [Staphylococcus aureus strain NGA66a]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTCGATGGCAGATTACAAACGCGT
AATTATGAAAATAAGGAAGGTCAACGTGTGTTTGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTCGATGGCAGATTACAAACGCGT
AATTATGAAAATAAGGAAGGTCAACGTGTGTTTGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
67.949 |
0.397 |