Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HGO93_RS14045 | Genome accession | NZ_CP051482 |
| Coordinates | 2836537..2837007 (+) | Length | 156 a.a. |
| NCBI ID | WP_138076570.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NGA104a | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2810625..2842754 | 2836537..2837007 | within | 0 |
Gene organization within MGE regions
Location: 2810625..2842754
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGO93_RS13865 (HGO93_10580) | groES | 2810625..2810909 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| HGO93_RS13870 (HGO93_10575) | groL | 2810985..2812601 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| HGO93_RS13875 (HGO93_10570) | - | 2812696..2813242 (-) | 547 | Protein_2697 | site-specific integrase | - |
| HGO93_RS13880 (HGO93_10565) | - | 2813303..2813515 (+) | 213 | WP_000128898.1 | hypothetical protein | - |
| HGO93_RS13885 (HGO93_10560) | - | 2813512..2814102 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| HGO93_RS13890 (HGO93_10555) | - | 2814419..2814856 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| HGO93_RS13895 (HGO93_10550) | - | 2814962..2815405 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| HGO93_RS13900 (HGO93_10545) | - | 2816259..2817566 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| HGO93_RS13905 (HGO93_10540) | - | 2817727..2818638 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| HGO93_RS13910 (HGO93_10535) | - | 2818700..2819545 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| HGO93_RS13915 (HGO93_10530) | - | 2819917..2821140 (-) | 1224 | WP_000206623.1 | ArgE/DapE family deacylase | - |
| HGO93_RS13920 (HGO93_10525) | lukH | 2821576..2822628 (+) | 1053 | WP_000791417.1 | bi-component leukocidin LukGH subunit H | - |
| HGO93_RS13925 (HGO93_10520) | lukG | 2822650..2823666 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| HGO93_RS13930 (HGO93_10515) | sph | 2823904..2824734 (-) | 831 | Protein_2708 | sphingomyelin phosphodiesterase | - |
| HGO93_RS13935 (HGO93_10510) | - | 2824785..2825822 (-) | 1038 | WP_000857176.1 | site-specific integrase | - |
| HGO93_RS13940 (HGO93_10505) | - | 2825930..2826544 (+) | 615 | WP_000191459.1 | hypothetical protein | - |
| HGO93_RS13945 (HGO93_10500) | - | 2826541..2826687 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| HGO93_RS13950 (HGO93_10495) | - | 2826723..2826905 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| HGO93_RS13955 (HGO93_10490) | - | 2827135..2827719 (-) | 585 | WP_249741482.1 | gas vesicle protein GvpG | - |
| HGO93_RS13960 (HGO93_10485) | - | 2827737..2828456 (-) | 720 | WP_249741483.1 | XRE family transcriptional regulator | - |
| HGO93_RS13965 (HGO93_10480) | - | 2828599..2828817 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| HGO93_RS13970 (HGO93_10475) | - | 2828831..2829091 (+) | 261 | WP_249741484.1 | transcriptional regulator | - |
| HGO93_RS13975 (HGO93_10470) | - | 2829115..2829654 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| HGO93_RS13980 (HGO93_10465) | - | 2829711..2830463 (+) | 753 | WP_249741485.1 | phage antirepressor KilAC domain-containing protein | - |
| HGO93_RS13985 (HGO93_10460) | - | 2830479..2830673 (+) | 195 | WP_001566738.1 | hypothetical protein | - |
| HGO93_RS13990 (HGO93_10455) | - | 2830668..2831024 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| HGO93_RS13995 (HGO93_10450) | - | 2831074..2831265 (+) | 192 | WP_000389905.1 | hypothetical protein | - |
| HGO93_RS14000 (HGO93_10445) | - | 2831267..2831494 (-) | 228 | WP_000801108.1 | hypothetical protein | - |
| HGO93_RS14005 (HGO93_10440) | - | 2831553..2831873 (+) | 321 | WP_001120935.1 | DUF771 domain-containing protein | - |
| HGO93_RS14010 (HGO93_10435) | - | 2831870..2832028 (+) | 159 | WP_249741396.1 | DUF1270 family protein | - |
| HGO93_RS14015 (HGO93_10430) | - | 2832125..2832427 (+) | 303 | WP_044131919.1 | DUF2482 family protein | - |
| HGO93_RS14020 (HGO93_10425) | - | 2832432..2832692 (+) | 261 | WP_031763794.1 | DUF1108 family protein | - |
| HGO93_RS14025 (HGO93_10420) | - | 2832701..2832964 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| HGO93_RS14030 (HGO93_10415) | - | 2832961..2834916 (+) | 1956 | WP_048657537.1 | AAA family ATPase | - |
| HGO93_RS14035 (HGO93_10410) | - | 2834918..2835838 (+) | 921 | WP_000138479.1 | recombinase RecT | - |
| HGO93_RS14040 (HGO93_10405) | - | 2835919..2836536 (+) | 618 | WP_249741440.1 | MBL fold metallo-hydrolase | - |
| HGO93_RS14045 (HGO93_10400) | ssbA | 2836537..2837007 (+) | 471 | WP_138076570.1 | single-stranded DNA-binding protein | Machinery gene |
| HGO93_RS14050 (HGO93_10395) | - | 2837037..2837921 (+) | 885 | WP_047213628.1 | DnaD domain protein | - |
| HGO93_RS14055 (HGO93_10390) | - | 2837928..2838146 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| HGO93_RS14060 (HGO93_10385) | - | 2838155..2838559 (+) | 405 | WP_249741397.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HGO93_RS14065 (HGO93_10380) | - | 2838572..2838940 (+) | 369 | WP_249741486.1 | SA1788 family PVL leukocidin-associated protein | - |
| HGO93_RS14070 (HGO93_10375) | - | 2838944..2839186 (+) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| HGO93_RS14075 (HGO93_10370) | - | 2839201..2839449 (+) | 249 | WP_249741539.1 | DUF1024 family protein | - |
| HGO93_RS14080 (HGO93_10365) | - | 2839442..2839954 (+) | 513 | WP_249741487.1 | dUTP pyrophosphatase | - |
| HGO93_RS14085 (HGO93_10360) | - | 2840024..2840197 (+) | 174 | WP_249741488.1 | hypothetical protein | - |
| HGO93_RS14090 (HGO93_10355) | - | 2840194..2840400 (+) | 207 | WP_249741489.1 | DUF1381 domain-containing protein | - |
| HGO93_RS14095 (HGO93_10350) | - | 2840397..2840546 (+) | 150 | WP_249741490.1 | transcriptional activator RinB | - |
| HGO93_RS14100 (HGO93_10345) | - | 2840546..2840746 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| HGO93_RS14105 (HGO93_10340) | - | 2840769..2841230 (+) | 462 | WP_000282753.1 | hypothetical protein | - |
| HGO93_RS14110 (HGO93_10335) | - | 2841345..2841797 (+) | 453 | WP_249741491.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| HGO93_RS14115 (HGO93_10330) | - | 2841813..2842157 (+) | 345 | WP_111061145.1 | HNH endonuclease | - |
| HGO93_RS14120 (HGO93_10325) | - | 2842287..2842754 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17653.57 Da Isoelectric Point: 5.2672
>NTDB_id=438851 HGO93_RS14045 WP_138076570.1 2836537..2837007(+) (ssbA) [Staphylococcus aureus strain NGA104a]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVFVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVFVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=438851 HGO93_RS14045 WP_138076570.1 2836537..2837007(+) (ssbA) [Staphylococcus aureus strain NGA104a]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTCGATGGCAGATTACAAACGCGT
AATTATGAAAATAAGGAAGGTCAACGTGTGTTTGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTCGATGGCAGATTACAAACGCGT
AATTATGAAAATAAGGAAGGTCAACGTGTGTTTGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
67.949 |
0.397 |