Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   HC658_RS19025 Genome accession   NZ_CP051466
Coordinates   3689216..3689335 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684216..3694335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS19000 (HC658_37380) albG 3684380..3685081 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  HC658_RS19005 (HC658_37390) ywhL 3685087..3686463 (-) 1377 WP_089172684.1 YncE family protein -
  HC658_RS19010 (HC658_37400) ywhK 3686502..3687857 (-) 1356 WP_032722703.1 YncE family protein -
  HC658_RS21195 - 3687854..3688084 (-) 231 WP_009968328.1 hypothetical protein -
  HC658_RS19020 (HC658_37410) rapF 3688087..3689232 (+) 1146 WP_168768968.1 response regulator aspartate phosphatase RapF Regulator
  HC658_RS19025 (HC658_37420) phrF 3689216..3689335 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  HC658_RS19030 - 3689449..3689899 (+) 451 Protein_3706 YbaK/EbsC family protein -
  HC658_RS19035 (HC658_37430) speB 3689931..3690803 (-) 873 WP_032722706.1 agmatinase -
  HC658_RS19040 (HC658_37440) speE 3690864..3691694 (-) 831 WP_003227543.1 spermidine synthase -
  HC658_RS19045 (HC658_37450) pbpG 3691896..3693971 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=438687 HC658_RS19025 WP_009968329.1 3689216..3689335(+) (phrF) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=438687 HC658_RS19025 WP_009968329.1 3689216..3689335(+) (phrF) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487