Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   HC659_RS18985 Genome accession   NZ_CP051465
Coordinates   3689015..3689134 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684015..3694134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS18960 (HC659_37380) albG 3684179..3684880 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  HC659_RS18965 (HC659_37390) ywhL 3684886..3686262 (-) 1377 WP_089172684.1 YncE family protein -
  HC659_RS18970 (HC659_37400) ywhK 3686301..3687656 (-) 1356 WP_032722703.1 YncE family protein -
  HC659_RS21125 - 3687653..3687883 (-) 231 WP_009968328.1 hypothetical protein -
  HC659_RS18980 (HC659_37410) rapF 3687886..3689031 (+) 1146 WP_168768968.1 response regulator aspartate phosphatase RapF Regulator
  HC659_RS18985 (HC659_37420) phrF 3689015..3689134 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  HC659_RS18990 - 3689248..3689698 (+) 451 Protein_3699 YbaK/EbsC family protein -
  HC659_RS18995 (HC659_37430) speB 3689730..3690602 (-) 873 WP_032722706.1 agmatinase -
  HC659_RS19000 (HC659_37440) speE 3690663..3691493 (-) 831 WP_003227543.1 spermidine synthase -
  HC659_RS19005 (HC659_37450) pbpG 3691695..3693770 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=438604 HC659_RS18985 WP_009968329.1 3689015..3689134(+) (phrF) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=438604 HC659_RS18985 WP_009968329.1 3689015..3689134(+) (phrF) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487