Detailed information NTG0438603

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HC659_RS18980
• Genome accession: NZ_CP051465
• Coordinates: 3687886..3689031 (+)
• Length: 381 a.a.
• NCBI ID: WP_168768968.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain UCMB5121
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3682886..3694031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HC659_RS18955 (HC659_37370)	albF	3682902..3684182 (+)	1281	WP_032722698.1	pitrilysin family protein	-
HC659_RS18960 (HC659_37380)	albG	3684179..3684880 (+)	702	WP_015250988.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
HC659_RS18965 (HC659_37390)	ywhL	3684886..3686262 (-)	1377	WP_089172684.1	YncE family protein	-
HC659_RS18970 (HC659_37400)	ywhK	3686301..3687656 (-)	1356	WP_032722703.1	YncE family protein	-
HC659_RS21125	-	3687653..3687883 (-)	231	WP_009968328.1	hypothetical protein	-
HC659_RS18980 (HC659_37410)	rapF	3687886..3689031 (+)	1146	WP_168768968.1	response regulator aspartate phosphatase RapF	Regulator
HC659_RS18985 (HC659_37420)	phrF	3689015..3689134 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
HC659_RS18990	-	3689248..3689698 (+)	451	Protein_3699	YbaK/EbsC family protein	-
HC659_RS18995 (HC659_37430)	speB	3689730..3690602 (-)	873	WP_032722706.1	agmatinase	-
HC659_RS19000 (HC659_37440)	speE	3690663..3691493 (-)	831	WP_003227543.1	spermidine synthase	-
HC659_RS19005 (HC659_37450)	pbpG	3691695..3693770 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45610.07 Da
• Isoelectric Point: 5.0649

>NTDB_id=438603 HC659_RS18980 WP_168768968.1 3687886..3689031(+) (rapF) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYDIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=438603 HC659_RS18980 WP_168768968.1 3687886..3689031(+) (rapF) [Bacillus subtilis subsp. subtilis strain UCMB5121]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACGATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

• Tetratricopeptide repeat (TPR_12) (223-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.738	100	0.997
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57