Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HC659_RS17920 Genome accession   NZ_CP051465
Coordinates   3486358..3487047 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3481358..3492047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS17885 (HC659_35300) flgN 3481539..3482021 (-) 483 WP_032722609.1 flagellar protein FlgN -
  HC659_RS17890 (HC659_35310) flgM 3482037..3482303 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC659_RS17895 (HC659_35320) yvyF 3482384..3482803 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  HC659_RS17900 (HC659_35330) comFC 3482876..3483598 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  HC659_RS17905 (HC659_35340) comFB 3483562..3483858 (-) 297 WP_015483764.1 late competence protein ComFB -
  HC659_RS17910 (HC659_35350) comFA 3483918..3485309 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  HC659_RS17915 (HC659_35360) fakBA 3485415..3486260 (-) 846 WP_003244125.1 DegV family protein -
  HC659_RS17920 (HC659_35370) degU 3486358..3487047 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC659_RS17925 (HC659_35380) degS 3487130..3488287 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  HC659_RS17930 (HC659_35390) yvyE 3488504..3489157 (+) 654 WP_003227979.1 YigZ family protein -
  HC659_RS17935 (HC659_35400) tagV 3489157..3490332 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  HC659_RS17940 (HC659_35410) tagO 3490405..3491481 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=438598 HC659_RS17920 WP_003219701.1 3486358..3487047(-) (degU) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=438598 HC659_RS17920 WP_003219701.1 3486358..3487047(-) (degU) [Bacillus subtilis subsp. subtilis strain UCMB5121]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1