Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   HC659_RS17925 Genome accession   NZ_CP051465
Coordinates   3487130..3488287 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482130..3493287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS17895 (HC659_35320) yvyF 3482384..3482803 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  HC659_RS17900 (HC659_35330) comFC 3482876..3483598 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  HC659_RS17905 (HC659_35340) comFB 3483562..3483858 (-) 297 WP_015483764.1 late competence protein ComFB -
  HC659_RS17910 (HC659_35350) comFA 3483918..3485309 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  HC659_RS17915 (HC659_35360) fakBA 3485415..3486260 (-) 846 WP_003244125.1 DegV family protein -
  HC659_RS17920 (HC659_35370) degU 3486358..3487047 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC659_RS17925 (HC659_35380) degS 3487130..3488287 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  HC659_RS17930 (HC659_35390) yvyE 3488504..3489157 (+) 654 WP_003227979.1 YigZ family protein -
  HC659_RS17935 (HC659_35400) tagV 3489157..3490332 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  HC659_RS17940 (HC659_35410) tagO 3490405..3491481 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  HC659_RS17945 (HC659_35420) tuaH 3491626..3492819 (-) 1194 WP_080287643.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=438599 HC659_RS17925 WP_003227983.1 3487130..3488287(-) (degS) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=438599 HC659_RS17925 WP_003227983.1 3487130..3488287(-) (degS) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1