Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HC659_RS17910 Genome accession   NZ_CP051465
Coordinates   3483918..3485309 (-) Length   463 a.a.
NCBI ID   WP_089172669.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3478918..3490309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS17875 (HC659_35280) flgL 3479090..3479986 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  HC659_RS17880 (HC659_35290) flgK 3479997..3481520 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  HC659_RS17885 (HC659_35300) flgN 3481539..3482021 (-) 483 WP_032722609.1 flagellar protein FlgN -
  HC659_RS17890 (HC659_35310) flgM 3482037..3482303 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC659_RS17895 (HC659_35320) yvyF 3482384..3482803 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  HC659_RS17900 (HC659_35330) comFC 3482876..3483598 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  HC659_RS17905 (HC659_35340) comFB 3483562..3483858 (-) 297 WP_015483764.1 late competence protein ComFB -
  HC659_RS17910 (HC659_35350) comFA 3483918..3485309 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  HC659_RS17915 (HC659_35360) fakBA 3485415..3486260 (-) 846 WP_003244125.1 DegV family protein -
  HC659_RS17920 (HC659_35370) degU 3486358..3487047 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC659_RS17925 (HC659_35380) degS 3487130..3488287 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  HC659_RS17930 (HC659_35390) yvyE 3488504..3489157 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52587.68 Da        Isoelectric Point: 10.0153

>NTDB_id=438597 HC659_RS17910 WP_089172669.1 3483918..3485309(-) (comFA) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MNVPVEKNGSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHIKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=438597 HC659_RS17910 WP_089172669.1 3483918..3485309(-) (comFA) [Bacillus subtilis subsp. subtilis strain UCMB5121]
GTGAATGTGCCAGTTGAAAAAAACGGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATATAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(327-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991