Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HC660_RS12750 Genome accession   NZ_CP051464
Coordinates   2437126..2437743 (-) Length   205 a.a.
NCBI ID   WP_010335008.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2432126..2442743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS12720 (HC660_24360) rpsT 2432429..2432695 (+) 267 WP_010335003.1 30S ribosomal protein S20 -
  HC660_RS12725 (HC660_24370) holA 2432710..2433753 (-) 1044 WP_168748275.1 DNA polymerase III subunit delta -
  HC660_RS12730 - 2433793..2433942 (-) 150 WP_003229985.1 hypothetical protein -
  HC660_RS12735 - 2433983..2434117 (+) 135 WP_010335005.1 YqzM family protein -
  HC660_RS12740 (HC660_24380) comEC 2434156..2436486 (-) 2331 WP_168749469.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HC660_RS12745 (HC660_24390) - 2436490..2437059 (-) 570 WP_010335007.1 ComE operon protein 2 -
  HC660_RS12750 (HC660_24400) comEA 2437126..2437743 (-) 618 WP_010335008.1 helix-hairpin-helix domain-containing protein Machinery gene
  HC660_RS12755 (HC660_24410) comER 2437827..2438648 (+) 822 WP_168748276.1 late competence protein ComER -
  HC660_RS12760 (HC660_24420) - 2438713..2439456 (-) 744 WP_168748277.1 class I SAM-dependent methyltransferase -
  HC660_RS12765 (HC660_24430) rsfS 2439453..2439809 (-) 357 WP_168748278.1 ribosome silencing factor -
  HC660_RS12770 (HC660_24440) yqeK 2439827..2440387 (-) 561 WP_168748279.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  HC660_RS12775 (HC660_24450) - 2440377..2440946 (-) 570 WP_168748280.1 nicotinate-nucleotide adenylyltransferase -
  HC660_RS12780 (HC660_24460) yhbY 2440957..2441247 (-) 291 WP_168748281.1 ribosome assembly RNA-binding protein YhbY -
  HC660_RS12785 (HC660_24470) aroE 2441247..2442083 (-) 837 WP_168748282.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22137.11 Da        Isoelectric Point: 4.6750

>NTDB_id=438498 HC660_RS12750 WP_010335008.1 2437126..2437743(-) (comEA) [Bacillus mojavensis strain UCMB5075]
MNWLNQHKMIIMSVAFAAVLIAVLCLFFFIGHNKEPVKQVISSEKDNAEVKQEVTKDKAEENIVIDIKGAVKHPGVYEMH
AGDRVSQAIEKAGGIGEKADETQVNLAELLQDGTVVYIPSEGEEEPQQAAGGAVQSSTGKEALVNINTATLEDLQNISGV
GPSKAEAIIAYREENGRFQAIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=438498 HC660_RS12750 WP_010335008.1 2437126..2437743(-) (comEA) [Bacillus mojavensis strain UCMB5075]
TTGAATTGGTTGAATCAACATAAAATGATCATCATGTCAGTGGCCTTTGCTGCTGTTCTCATTGCGGTTCTTTGTCTCTT
TTTTTTCATCGGGCATAACAAAGAGCCTGTAAAACAAGTGATATCTAGTGAAAAGGATAATGCTGAGGTTAAGCAGGAAG
TGACAAAAGACAAAGCGGAAGAAAATATTGTAATTGACATAAAAGGTGCTGTTAAGCATCCCGGCGTTTATGAAATGCAT
GCAGGGGACAGAGTGTCACAGGCTATTGAGAAAGCAGGCGGCATCGGCGAAAAAGCAGATGAAACGCAAGTGAATTTGGC
GGAACTTTTGCAGGACGGTACAGTGGTGTATATACCGAGTGAGGGAGAAGAGGAGCCGCAGCAAGCGGCCGGAGGCGCTG
TACAAAGCAGTACGGGGAAAGAGGCCTTGGTCAATATCAATACAGCAACATTAGAGGATTTACAAAACATTTCAGGAGTA
GGGCCTTCAAAAGCCGAAGCGATTATTGCATATCGGGAAGAGAACGGGCGTTTTCAGGCAATTGAAGATATCACAAAGGT
TTCGGGAATTGGCGAAAAATCATTTGAAAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(64-119)

Helix-hairpin-helix motif (HHH_3)

(141-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

74.272

100

0.746
  comEA Staphylococcus aureus MW2

38.182

100

0.41
  comEA Staphylococcus aureus N315

37.387

100

0.405