Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HC661_RS16820 Genome accession   NZ_CP051463
Coordinates   3437862..3438551 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain UCMB5140     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3432862..3443551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS16785 (HC661_32310) - 3433062..3433544 (-) 483 WP_015418332.1 flagellar protein FlgN -
  HC661_RS16790 (HC661_32320) flgM 3433559..3433825 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC661_RS16795 (HC661_32330) - 3433895..3434313 (-) 419 Protein_3263 TIGR03826 family flagellar region protein -
  HC661_RS16800 (HC661_32340) comFC 3434387..3435076 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  HC661_RS16805 (HC661_32350) - 3435082..3435366 (-) 285 WP_003151389.1 competence protein ComFB -
  HC661_RS16810 - 3435424..3436808 (-) 1385 Protein_3266 DEAD/DEAH box helicase -
  HC661_RS16815 (HC661_32370) - 3436916..3437764 (-) 849 WP_015418336.1 DegV family protein -
  HC661_RS16820 (HC661_32380) degU 3437862..3438551 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC661_RS16825 (HC661_32390) degS 3438628..3439791 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  HC661_RS16830 (HC661_32400) - 3440014..3440661 (+) 648 WP_003151384.1 YigZ family protein -
  HC661_RS16835 (HC661_32410) - 3440666..3441880 (+) 1215 WP_015418337.1 LCP family protein -
  HC661_RS16840 (HC661_32420) - 3441970..3443046 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=438436 HC661_RS16820 WP_003219701.1 3437862..3438551(-) (degU) [Bacillus velezensis strain UCMB5140]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=438436 HC661_RS16820 WP_003219701.1 3437862..3438551(-) (degU) [Bacillus velezensis strain UCMB5140]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1