Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HC661_RS16800 Genome accession   NZ_CP051463
Coordinates   3434387..3435076 (-) Length   229 a.a.
NCBI ID   WP_196493397.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5140     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429387..3440076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS16765 (HC661_32270) fliW 3429479..3429910 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  HC661_RS16770 (HC661_32280) - 3429940..3430509 (-) 570 WP_007407476.1 DUF6470 family protein -
  HC661_RS16775 (HC661_32290) flgL 3430600..3431517 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  HC661_RS16780 (HC661_32300) flgK 3431529..3433046 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  HC661_RS16785 (HC661_32310) - 3433062..3433544 (-) 483 WP_015418332.1 flagellar protein FlgN -
  HC661_RS16790 (HC661_32320) flgM 3433559..3433825 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HC661_RS16795 (HC661_32330) - 3433895..3434313 (-) 419 Protein_3263 TIGR03826 family flagellar region protein -
  HC661_RS16800 (HC661_32340) comFC 3434387..3435076 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  HC661_RS16805 (HC661_32350) - 3435082..3435366 (-) 285 WP_003151389.1 competence protein ComFB -
  HC661_RS16810 - 3435424..3436808 (-) 1385 Protein_3266 DEAD/DEAH box helicase -
  HC661_RS16815 (HC661_32370) - 3436916..3437764 (-) 849 WP_015418336.1 DegV family protein -
  HC661_RS16820 (HC661_32380) degU 3437862..3438551 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HC661_RS16825 (HC661_32390) degS 3438628..3439791 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25245.83 Da        Isoelectric Point: 8.0779

>NTDB_id=438435 HC661_RS16800 WP_196493397.1 3434387..3435076(-) (comFC) [Bacillus velezensis strain UCMB5140]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=438435 HC661_RS16800 WP_196493397.1 3434387..3435076(-) (comFC) [Bacillus velezensis strain UCMB5140]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598