Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   HC661_RS11915 Genome accession   NZ_CP051463
Coordinates   2465865..2466302 (-) Length   145 a.a.
NCBI ID   WP_015417817.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5140     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2460865..2471302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS11865 (HC661_22730) sinI 2461249..2461422 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  HC661_RS11870 (HC661_22740) sinR 2461456..2461791 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  HC661_RS11875 (HC661_22750) - 2461839..2462624 (-) 786 WP_007408329.1 TasA family protein -
  HC661_RS11880 (HC661_22760) - 2462689..2463273 (-) 585 WP_015240205.1 signal peptidase I -
  HC661_RS11885 (HC661_22770) tapA 2463245..2463916 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  HC661_RS11890 (HC661_22780) - 2464175..2464504 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  HC661_RS11895 (HC661_22790) - 2464544..2464723 (-) 180 WP_003153093.1 YqzE family protein -
  HC661_RS11900 (HC661_22800) comGG 2464780..2465157 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  HC661_RS11905 (HC661_22810) comGF 2465158..2465658 (-) 501 WP_258548905.1 competence type IV pilus minor pilin ComGF -
  HC661_RS11910 (HC661_22820) comGE 2465567..2465881 (-) 315 WP_031378943.1 competence type IV pilus minor pilin ComGE -
  HC661_RS11915 (HC661_22830) comGD 2465865..2466302 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  HC661_RS11920 (HC661_22840) comGC 2466292..2466600 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene
  HC661_RS11925 (HC661_22850) comGB 2466605..2467642 (-) 1038 WP_015417819.1 competence type IV pilus assembly protein ComGB Machinery gene
  HC661_RS11930 (HC661_22860) comGA 2467629..2468699 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  HC661_RS11935 (HC661_22870) - 2468892..2469842 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  HC661_RS11940 (HC661_22880) - 2469988..2471289 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16226.70 Da        Isoelectric Point: 10.1850

>NTDB_id=438415 HC661_RS11915 WP_015417817.1 2465865..2466302(-) (comGD) [Bacillus velezensis strain UCMB5140]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPACTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=438415 HC661_RS11915 WP_015417817.1 2465865..2466302(-) (comGD) [Bacillus velezensis strain UCMB5140]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATCCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566