Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HC661_RS11870 Genome accession   NZ_CP051463
Coordinates   2461456..2461791 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5140     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2456456..2466791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS11850 (HC661_22700) gcvT 2457062..2458162 (-) 1101 WP_015417809.1 glycine cleavage system aminomethyltransferase GcvT -
  HC661_RS11855 (HC661_22710) - 2458586..2460256 (+) 1671 WP_015417810.1 SNF2-related protein -
  HC661_RS11860 (HC661_22720) - 2460278..2461072 (+) 795 WP_015417811.1 YqhG family protein -
  HC661_RS11865 (HC661_22730) sinI 2461249..2461422 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  HC661_RS11870 (HC661_22740) sinR 2461456..2461791 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  HC661_RS11875 (HC661_22750) - 2461839..2462624 (-) 786 WP_007408329.1 TasA family protein -
  HC661_RS11880 (HC661_22760) - 2462689..2463273 (-) 585 WP_015240205.1 signal peptidase I -
  HC661_RS11885 (HC661_22770) tapA 2463245..2463916 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  HC661_RS11890 (HC661_22780) - 2464175..2464504 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  HC661_RS11895 (HC661_22790) - 2464544..2464723 (-) 180 WP_003153093.1 YqzE family protein -
  HC661_RS11900 (HC661_22800) comGG 2464780..2465157 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  HC661_RS11905 (HC661_22810) comGF 2465158..2465658 (-) 501 WP_258548905.1 competence type IV pilus minor pilin ComGF -
  HC661_RS11910 (HC661_22820) comGE 2465567..2465881 (-) 315 WP_031378943.1 competence type IV pilus minor pilin ComGE -
  HC661_RS11915 (HC661_22830) comGD 2465865..2466302 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  HC661_RS11920 (HC661_22840) comGC 2466292..2466600 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=438413 HC661_RS11870 WP_003153104.1 2461456..2461791(+) (sinR) [Bacillus velezensis strain UCMB5140]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=438413 HC661_RS11870 WP_003153104.1 2461456..2461791(+) (sinR) [Bacillus velezensis strain UCMB5140]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991