Detailed information NTG0437658

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: IM720_RS20600
• Genome accession: NZ_CP063233
• Coordinates: 4620095..4621378 (-)
• Length: 427 a.a.
• NCBI ID: WP_010564906.1
• Uniprot ID: A0ACA7P9P3
• Organism: Pseudomonas fluorescens strain KF1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4615095..4626378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM720_RS20590 (IM720_20590)	-	4617102..4617374 (-)	273	WP_003174819.1	HU family DNA-binding protein	-
IM720_RS20595 (IM720_20595)	lon	4617523..4619919 (-)	2397	WP_193689523.1	endopeptidase La	-
IM720_RS20600 (IM720_20600)	clpX	4620095..4621378 (-)	1284	WP_010564906.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
IM720_RS20605 (IM720_20605)	clpP	4621491..4622126 (-)	636	WP_024076272.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
IM720_RS20610 (IM720_20610)	tig	4622218..4623528 (-)	1311	WP_024076273.1	trigger factor	-
IM720_RS20635 (IM720_20635)	folD	4624685..4625539 (+)	855	WP_193689524.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46909.52 Da
• Isoelectric Point: 4.8459

>NTDB_id=437658 IM720_RS20600 WP_010564906.1 4620095..4621378(-) (clpX) [Pseudomonas fluorescens strain KF1]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPAAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=437658 IM720_RS20600 WP_010564906.1 4620095..4621378(-) (clpX) [Pseudomonas fluorescens strain KF1]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCATGAAGTACG
CAAATTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGTGAGGAGGTGC
AGGAAGCCCAGGCCGAAAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGACCAGTATGTGATT
GGTCAAGAGCGTGCAAAGAAGGTTCTGGCCGTAGCGGTGTACAACCACTACAAGCGCTTGAACCAGCGTGACAAGAAAGG
CGACGAAGTCGAACTCGGCAAGAGCAACATCTTGCTGATTGGACCTACAGGCTCGGGTAAAACCCTGCTTGCAGAAACCC
TCGCTCGCCTGCTGAACGTTCCGTTCACCATCGCCGACGCCACCACCCTCACCGAGGCTGGCTACGTGGGTGAAGATGTC
GAGAACATCATTCAGAAACTGCTGCAGAAGTGCGACTACGATGTTGAGAAGGCCCAGATGGGTATTGTCTACATCGACGA
AATCGACAAGATTTCCCGCAAGTCCGACAATCCGTCGATCACCCGGGATGTTTCCGGTGAAGGCGTTCAGCAGGCACTGT
TGAAGCTGATTGAAGGCACGGTTGCTTCCGTACCGCCACAAGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTTCAGGTT
GATACGCGTAACATCCTGTTCATCTGTGGCGGTGCGTTCTCCGGTCTGGAAAAGGTTATTCAAAACCGTTCCACCCGTGG
CGGCATTGGTTTCAGTGCAGAGGTACGCAGCAAGGAAGAAGGCAAGAAGGTGGGCGAGTCCCTGCGTGAAGTTGAACCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCGGAATTCGTTGGCCGTCTGCCGGTCCTGGCCACGTTGGACGAGTTGGATGAG
GCGGCTCTGATTCAGATCCTCACCGAGCCGAAAAACGCCCTGACCAAGCAATATGCCAAGCTGTTCGAAATGGAAGGTGT
AGACCTCGAGTTCCGTACCGATGCACTCAAATCGGTGGCCAAGCGGGCACTGGAGCGCAAGACCGGTGCGCGTGGCCTGC
GCTCGATTCTCGAAGGCGTGTTGCTCGACACCATGTACGAAATCCCCTCGCAATCCGAGGTGAGTAAAGTGGTGATCGAC
GAAAGCGTTATTGAAGGTAAGTCCAAGCCACTGTATATCTACGAAAACAGTGAGCCTGCTGCCAAGGCTGCGCCAGACGC
GTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.591	95.082	0.576
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.188	94.614	0.532