NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	IM720_RS20605	Genome accession	NZ_CP063233
Coordinates	4621491..4622126 (-)	Length	211 a.a.
NCBI ID	WP_024076272.1	Uniprot ID	A0ACA7P9Q8
Organism	Pseudomonas fluorescens strain KF1
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4616491..4627126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM720_RS20590 (IM720_20590)	-	4617102..4617374 (-)	273	WP_003174819.1	HU family DNA-binding protein	-
IM720_RS20595 (IM720_20595)	lon	4617523..4619919 (-)	2397	WP_193689523.1	endopeptidase La	-
IM720_RS20600 (IM720_20600)	clpX	4620095..4621378 (-)	1284	WP_010564906.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
IM720_RS20605 (IM720_20605)	clpP	4621491..4622126 (-)	636	WP_024076272.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
IM720_RS20610 (IM720_20610)	tig	4622218..4623528 (-)	1311	WP_024076273.1	trigger factor	-
IM720_RS20635 (IM720_20635)	folD	4624685..4625539 (+)	855	WP_193689524.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
IM720_RS20640 (IM720_20640)	pbpG	4625979..4626902 (+)	924	WP_069076554.1	D-alanyl-D-alanine endopeptidase	-

Sequence

Protein

Download Length: 211 a.a. Molecular weight: 23477.81 Da Isoelectric Point: 5.3071

                                >NTDB_id=437659 IM720_RS20605 WP_024076272.1 4621491..4622126(-) (clpP) [Pseudomonas fluorescens strain KF1]

MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAREIL

FIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAARDYGLIDAVIEKRPA

Nucleotide

Download Length: 636 bp

                                >NTDB_id=437659 IM720_RS20605 WP_024076272.1 4621491..4622126(-) (clpP) [Pseudomonas fluorescens strain KF1]

ATGTTCCGTAATTCCTATATTCAGCAGAACTCTGATATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTGTCGAGCAGTC

CGCTCGTGGCGAACGCGCCTACGACATCTACTCGCGCCTGCTCAAGGAGCGAGTGATCTTTCTGGTGGGTCCTGTAGAGG

ACTACATGGCCAACCTGATCTGTGCGCAACTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTTTACATT

AACTCGCCGGGCGGTTCGGTGACTGCGGGCATGTCGATCTACGACACCATGCAGTTTATCAAGCCGAACGTGTCGACCAC

CTGCATCGGCCAGGCATGCAGCATGGGCGCATTCCTGCTGACCGCTGGTGCCGAAGGCAAGCGTTACTGCCTGCCGAACT

CGCGTGTGATGATTCACCAGCCACTGGGCGGCTTCCAGGGCCAGGCATCGGATATCGAAATCCATGCCAGGGAGATCCTC

TTTATTCGTGAGCGTCTCAACACGCTGATGGCCAAGCACAGCGGGCATACCTTGGAAGAAATCGAGCGTGATACCAACCG

TGACAATTTCATGAGTGCCGAAGCGGCACGTGATTACGGGTTGATCGACGCAGTGATCGAAAAGCGCCCCGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.553	89.1	0.602
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.211	90.047	0.578
clpP	Lactococcus lactis subsp. cremoris KW2	54.922	91.469	0.502
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	53.368	91.469	0.488
clpP	Streptococcus mutans UA159	52.356	90.521	0.474
clpP	Streptococcus pyogenes MGAS315	51.832	90.521	0.469
clpP	Streptococcus pyogenes JRS4	51.832	90.521	0.469
clpP	Streptococcus pneumoniae D39	51.579	90.047	0.464
clpP	Streptococcus pneumoniae Rx1	51.579	90.047	0.464
clpP	Streptococcus pneumoniae R6	51.579	90.047	0.464
clpP	Streptococcus pneumoniae TIGR4	51.579	90.047	0.464
clpP	Streptococcus thermophilus LMG 18311	51.053	90.047	0.46
clpP	Streptococcus thermophilus LMD-9	51.053	90.047	0.46

Detailed information NTG0437659