Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   IL987_RS11765 Genome accession   NZ_CP063214
Coordinates   2415230..2415889 (+) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain ERP001     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2410230..2420889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL987_RS11750 ygiS 2412435..2414042 (-) 1608 WP_001298384.1 ABC transporter substrate-binding protein -
  IL987_RS11755 ygiV 2414151..2414633 (-) 483 WP_000183491.1 GyrI-like domain-containing protein -
  IL987_RS11760 ygiW 2414686..2415078 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  IL987_RS11765 ciaR 2415230..2415889 (+) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  IL987_RS11770 qseC 2415886..2417235 (+) 1350 WP_000673391.1 quorum sensing histidine kinase QseC -
  IL987_RS11775 ygiZ 2417281..2417613 (-) 333 WP_000914695.1 DUF2645 family protein -
  IL987_RS24260 - 2417620..2418330 (-) 711 WP_000834021.1 hypothetical protein -
  IL987_RS24265 - 2418333..2418812 (-) 480 WP_000065329.1 Hcp family type VI secretion system effector -
  IL987_RS11785 mdaB 2419062..2419643 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  IL987_RS11790 ygiN 2419674..2419988 (+) 315 WP_000633738.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=437547 IL987_RS11765 WP_001221493.1 2415230..2415889(+) (ciaR) [Escherichia coli strain ERP001]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=437547 IL987_RS11765 WP_001221493.1 2415230..2415889(+) (ciaR) [Escherichia coli strain ERP001]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCTGTATTGATCCTGACTGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGCAACGTCATGC
TAGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACGCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365