Detailed information NTG0043747

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSF113_RS51585
• Genome accession: NC_016830
• Coordinates: 4893662..4895908 (-)
• Length: 748 a.a.
• NCBI ID: WP_014339520.1
• Uniprot ID: -
• Organism: Pseudomonas ogarae
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4888662..4900908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSF113_RS51550 (PSF113_4161)	murB	4889046..4890065 (-)	1020	WP_014339515.1	UDP-N-acetylmuramate dehydrogenase	-
PSF113_RS51555 (PSF113_4162)	-	4890062..4890526 (-)	465	WP_014339516.1	low molecular weight protein-tyrosine-phosphatase	-
PSF113_RS51560 (PSF113_4163)	kdsB	4890526..4891290 (-)	765	WP_014339517.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSF113_RS51565 (PSF113_4164)	-	4891287..4891472 (-)	186	WP_003179363.1	Trm112 family protein	-
PSF113_RS51570 (PSF113_4165)	lpxK	4891496..4892506 (-)	1011	WP_014339518.1	tetraacyldisaccharide 4'-kinase	-
PSF113_RS51575 (PSF113_4166)	-	4892506..4892934 (-)	429	WP_013694002.1	biopolymer transporter ExbD	-
PSF113_RS51580 (PSF113_4167)	exbB	4892931..4893566 (-)	636	WP_014339519.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSF113_RS51585 (PSF113_4168)	comA	4893662..4895908 (-)	2247	WP_014339520.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSF113_RS51590 (PSF113_4169)	-	4896053..4896568 (+)	516	WP_041476071.1	DUF2062 domain-containing protein	-
PSF113_RS51595 (PSF113_4170)	-	4896735..4897514 (-)	780	WP_041476072.1	ABC transporter permease	-
PSF113_RS51600 (PSF113_4171)	-	4897517..4898449 (-)	933	WP_014339523.1	ABC transporter ATP-binding protein	-
PSF113_RS51605 (PSF113_4172)	-	4898586..4899209 (-)	624	WP_041476382.1	glutathione S-transferase family protein	-
PSF113_RS51610 (PSF113_4173)	-	4899254..4899913 (-)	660	WP_014339525.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81189.38 Da
• Isoelectric Point: 9.8270

>NTDB_id=43747 PSF113_RS51585 WP_014339520.1 4893662..4895908(-) (comA) [Pseudomonas ogarae]
MRTGLVALALGLLAPIFLPALPPQWLIAAMPVLALMALPFRSYPLGFFLFGLAWACLSAQCALDDRLPAALDGETRWVEG
RVVGLPQQGDGVVRFELADVHSRRTRLPTAMRLAWFGGPPINSGERWRLAVKLKRPAGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLTREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPAGLAWLPWACALAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPLLGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVPPWVLAIAVLGAFLLLLPKGVPLRVLGWPMVLLMV
FPPREHLPQRHAEIWQLDVGQGLAVLVRTRHHSLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
RAVRNGLPTMEVISGDPDALPAELLAGPCESGRRWEWDGVRFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDIHAE
RALLDESLAAPIQWLAAPHHGSRSSSSMALLSRLQPHSVLISRGQGNAFGHPHPQVMARYRRSGLAVYDSAEQGAIRLQL
GAFEGPRTEAGRRRYWRDPRAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=43747 PSF113_RS51585 WP_014339520.1 4893662..4895908(-) (comA) [Pseudomonas ogarae]
ATGCGCACAGGATTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGCAGTGGCTGAT
TGCAGCCATGCCGGTGCTGGCGCTGATGGCGTTGCCGTTTCGAAGCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCGT
GGGCCTGCCTGTCGGCGCAGTGTGCGCTGGATGATCGGTTACCCGCCGCGCTCGACGGTGAAACCCGCTGGGTCGAGGGG
CGCGTCGTCGGTTTGCCGCAACAGGGTGATGGCGTGGTGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGGCT
ACCGACGGCGATGCGCCTCGCCTGGTTCGGTGGCCCGCCCATCAATAGCGGCGAACGCTGGCGATTGGCGGTGAAGCTCA
AGCGGCCCGCCGGGCTGCTGAACCCACACGGCTTCGACTATGCCGCCTGGTTGTTGAGCCGAGGTATCGGCGCGACCGGT
ACGATCAAGGACGGTCACCTCCTGCAAGCGGCCCGGGGCGCCTGGCGCGACGAGGTGCGCCAGGCGCTGGCACAAGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCATTGGTCCTGGGCGACGGCGGCGGCCTGACTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACGGTCCATTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCGGGCGCGGCGCGTTATGGTCTGTGGCCGGCAGGTCTGGCCTGGTTGCCTTGGGCCTGTGCGCTGGCCTTCTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCTTGCGCGATGATCGGCCTGGTGCTGTTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCCTGGCTGCTGGCCTTCGTCGGAGTGCTGGTGTTCGACCCGCTT
GCCAGCCTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCGGTCGCCATCTTGATGTTCACCTTTGGCGGTCGCCTGGGGCC
GTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGGTCGGCCTGTGTCCGTTGCTGTTGATCGTGGGCT
TGCCGGTCAGCCTCAGCGGGCCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTCTTGCCGCCAGCGTTG
CTCGGCACGGCGTTGTTGCCGGTGCCGCTCTTGGGCGAAGGCCTGCTGTGGATCGCTGGCGGGCTGCTTGATCTGCTGTT
CAAGGGGCTGACGCTGGTTGCCGGACGAATGCCGGCCTGGGTCCCTGCTGCGGTCCCGCCCTGGGTCTTGGCTATCGCCG
TCCTCGGTGCTTTTTTGCTGCTGCTACCCAAAGGTGTGCCACTCCGTGTACTGGGGTGGCCAATGGTGTTGCTGATGGTG
TTTCCACCACGAGAGCACCTGCCCCAACGGCACGCCGAGATCTGGCAACTGGACGTGGGACAAGGGCTGGCGGTGCTGGT
ACGGACCCGGCATCACAGCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAAGCTGATGTGGGCGAGCGGGTCGTATTGC
CGACGTTGCGCAAACTGGGTGTGCGCGGTTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCGGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGATGGAAGTCATCAGCGGCGATCCTGACGCGCTGCCCGCCGAGCTGCTGGCCGG
ACCTTGTGAAAGCGGTAGGCGTTGGGAATGGGACGGAGTCAGGTTCGAGCTGTGGCGGTGGGCCTCTGCCGTTGAAAGCA
ACCAGAAGTCCTGCGTCCTGCTGGTGGAGGCCGGCGGCGAACGCCTGCTGCTGACTGGCGATATCGACATCCATGCCGAA
CGGGCCTTGCTCGACGAGTCCCTGGCGGCGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGTAGCCGCAGTTCGTCGTC
GATGGCGTTGCTGTCACGTCTCCAGCCGCATTCGGTATTGATCTCCCGAGGGCAGGGCAACGCGTTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGACGCTCGGGCCTGGCGGTCTACGACAGTGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGTGCTTTCGAGGGGCCGCGCACCGAGGCCGGGCGCCGCCGCTACTGGCGTGATCCGCGAGCCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.034	95.722	0.584