Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSF113_RS51580 Genome accession   NC_016830
Coordinates   4892931..4893566 (-) Length   211 a.a.
NCBI ID   WP_014339519.1    Uniprot ID   -
Organism   Pseudomonas ogarae     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4887931..4898566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSF113_RS51545 (PSF113_4160) - 4888310..4888780 (-) 471 WP_014339514.1 (2Fe-2S)-binding protein -
  PSF113_RS51550 (PSF113_4161) murB 4889046..4890065 (-) 1020 WP_014339515.1 UDP-N-acetylmuramate dehydrogenase -
  PSF113_RS51555 (PSF113_4162) - 4890062..4890526 (-) 465 WP_014339516.1 low molecular weight protein-tyrosine-phosphatase -
  PSF113_RS51560 (PSF113_4163) kdsB 4890526..4891290 (-) 765 WP_014339517.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSF113_RS51565 (PSF113_4164) - 4891287..4891472 (-) 186 WP_003179363.1 Trm112 family protein -
  PSF113_RS51570 (PSF113_4165) lpxK 4891496..4892506 (-) 1011 WP_014339518.1 tetraacyldisaccharide 4'-kinase -
  PSF113_RS51575 (PSF113_4166) - 4892506..4892934 (-) 429 WP_013694002.1 biopolymer transporter ExbD -
  PSF113_RS51580 (PSF113_4167) exbB 4892931..4893566 (-) 636 WP_014339519.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSF113_RS51585 (PSF113_4168) comA 4893662..4895908 (-) 2247 WP_014339520.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSF113_RS51590 (PSF113_4169) - 4896053..4896568 (+) 516 WP_041476071.1 DUF2062 domain-containing protein -
  PSF113_RS51595 (PSF113_4170) - 4896735..4897514 (-) 780 WP_041476072.1 ABC transporter permease -
  PSF113_RS51600 (PSF113_4171) - 4897517..4898449 (-) 933 WP_014339523.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22813.95 Da        Isoelectric Point: 8.0841

>NTDB_id=43746 PSF113_RS51580 WP_014339519.1 4892931..4893566(-) (exbB) [Pseudomonas ogarae]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=43746 PSF113_RS51580 WP_014339519.1 4892931..4893566(-) (exbB) [Pseudomonas ogarae]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAACTCAAGGAGCTGCGGGCCAGTTCACCGCTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTATAT
CAGCACCCTGGGGACCATCGCCGCCATGTCCCCACTGTTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGCATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGGTGCAGGGTGACCGTGAAGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839

Multiple sequence alignment