Detailed information NTG0437242

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HGI44_RS00210
• Genome accession: NZ_CP051291
• Coordinates: 35367..36503 (+)
• Length: 378 a.a.
• NCBI ID: WP_202136284.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-002
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30367..41503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGI44_RS00175 (HGI44_00175)	panD	30811..31161 (+)	351	WP_202136281.1	aspartate 1-decarboxylase	-
HGI44_RS00180 (HGI44_00180)	-	31172..31465 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HGI44_RS00185 (HGI44_00185)	-	31465..32472 (+)	1008	WP_202136531.1	PDZ domain-containing protein	-
HGI44_RS00190 (HGI44_00190)	comB6	32480..33535 (+)	1056	WP_202136530.1	P-type conjugative transfer protein TrbL	Machinery gene
HGI44_RS00195 (HGI44_00195)	comB7	33551..33664 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HGI44_RS00200 (HGI44_00200)	comB8	33657..34403 (+)	747	WP_202136282.1	virB8 family protein	Machinery gene
HGI44_RS00205 (HGI44_00205)	comB9	34403..35374 (+)	972	WP_202136283.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGI44_RS00210 (HGI44_00210)	comB10	35367..36503 (+)	1137	WP_202136284.1	DNA type IV secretion system protein ComB10	Machinery gene
HGI44_RS00215 (HGI44_00215)	-	36573..37985 (+)	1413	WP_202132919.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HGI44_RS00220 (HGI44_00220)	gmd	38000..39145 (+)	1146	WP_202136285.1	GDP-mannose 4,6-dehydratase	-
HGI44_RS00225 (HGI44_00225)	-	39138..40070 (+)	933	WP_202132920.1	GDP-L-fucose synthase	-
HGI44_RS00230 (HGI44_00230)	hypE	40350..41348 (-)	999	WP_202132921.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42143.76 Da
• Isoelectric Point: 9.8461

>NTDB_id=437242 HGI44_RS00210 WP_202136284.1 35367..36503(+) (comB10) [Helicobacter pylori strain ASHA-002]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=437242 HGI44_RS00210 WP_202136284.1 35367..36503(+) (comB10) [Helicobacter pylori strain ASHA-002]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCTCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAGC
AAACACAACACCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCTCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAGAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.238	100	0.952