Detailed information NTG0437238

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HGI44_RS00190
• Genome accession: NZ_CP051291
• Coordinates: 32480..33535 (+)
• Length: 351 a.a.
• NCBI ID: WP_202136530.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-002
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27480..38535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGI44_RS00160 (HGI44_00160)	-	27903..28316 (+)	414	WP_202136279.1	universal stress protein	-
HGI44_RS00165 (HGI44_00165)	-	28324..28599 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HGI44_RS00170 (HGI44_00170)	-	28599..30821 (+)	2223	WP_202136280.1	ATP-dependent Clp protease ATP-binding subunit	-
HGI44_RS00175 (HGI44_00175)	panD	30811..31161 (+)	351	WP_202136281.1	aspartate 1-decarboxylase	-
HGI44_RS00180 (HGI44_00180)	-	31172..31465 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HGI44_RS00185 (HGI44_00185)	-	31465..32472 (+)	1008	WP_202136531.1	PDZ domain-containing protein	-
HGI44_RS00190 (HGI44_00190)	comB6	32480..33535 (+)	1056	WP_202136530.1	P-type conjugative transfer protein TrbL	Machinery gene
HGI44_RS00195 (HGI44_00195)	comB7	33551..33664 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HGI44_RS00200 (HGI44_00200)	comB8	33657..34403 (+)	747	WP_202136282.1	virB8 family protein	Machinery gene
HGI44_RS00205 (HGI44_00205)	comB9	34403..35374 (+)	972	WP_202136283.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGI44_RS00210 (HGI44_00210)	comB10	35367..36503 (+)	1137	WP_202136284.1	DNA type IV secretion system protein ComB10	Machinery gene
HGI44_RS00215 (HGI44_00215)	-	36573..37985 (+)	1413	WP_202132919.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39722.67 Da
• Isoelectric Point: 9.0413

>NTDB_id=437238 HGI44_RS00190 WP_202136530.1 32480..33535(+) (comB6) [Helicobacter pylori strain ASHA-002]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=437238 HGI44_RS00190 WP_202136530.1 32480..33535(+) (comB6) [Helicobacter pylori strain ASHA-002]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTCTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCGTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96