Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HGI44_RS00200 Genome accession   NZ_CP051291
Coordinates   33657..34403 (+) Length   248 a.a.
NCBI ID   WP_202136282.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28657..39403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI44_RS00175 (HGI44_00175) panD 30811..31161 (+) 351 WP_202136281.1 aspartate 1-decarboxylase -
  HGI44_RS00180 (HGI44_00180) - 31172..31465 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HGI44_RS00185 (HGI44_00185) - 31465..32472 (+) 1008 WP_202136531.1 PDZ domain-containing protein -
  HGI44_RS00190 (HGI44_00190) comB6 32480..33535 (+) 1056 WP_202136530.1 P-type conjugative transfer protein TrbL Machinery gene
  HGI44_RS00195 (HGI44_00195) comB7 33551..33664 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HGI44_RS00200 (HGI44_00200) comB8 33657..34403 (+) 747 WP_202136282.1 virB8 family protein Machinery gene
  HGI44_RS00205 (HGI44_00205) comB9 34403..35374 (+) 972 WP_202136283.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HGI44_RS00210 (HGI44_00210) comB10 35367..36503 (+) 1137 WP_202136284.1 DNA type IV secretion system protein ComB10 Machinery gene
  HGI44_RS00215 (HGI44_00215) - 36573..37985 (+) 1413 WP_202132919.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HGI44_RS00220 (HGI44_00220) gmd 38000..39145 (+) 1146 WP_202136285.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28750.97 Da        Isoelectric Point: 8.9844

>NTDB_id=437240 HGI44_RS00200 WP_202136282.1 33657..34403(+) (comB8) [Helicobacter pylori strain ASHA-002]
MHEKKPFNSEQLAFLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQK
TEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSI
YAQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITE
IAPTNRGD

Nucleotide


Download         Length: 747 bp        

>NTDB_id=437240 HGI44_RS00200 WP_202136282.1 33657..34403(+) (comB8) [Helicobacter pylori strain ASHA-002]
TTGCATGAAAAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGA
AAACAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCG
CTTATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTGATCAGTGTTTTACCCTTACAAAAA
ACCGAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGTATTTCTAG
TAATGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGC
GCTATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGACTTAATTAAAACGCAAAACAGCATT
TATGCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAG
CGTTTCCATTGCGGCTAAACTAATGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGT
TTGACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAA
ATCGCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(39-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.143

98.79

0.96