Detailed information NTG0437222

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HGI43_RS00210
• Genome accession: NZ_CP051290
• Coordinates: 35365..36501 (+)
• Length: 378 a.a.
• NCBI ID: WP_202135613.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30365..41501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGI43_RS00175 (HGI43_00175)	panD	30813..31163 (+)	351	WP_029647093.1	aspartate 1-decarboxylase	-
HGI43_RS00180 (HGI43_00180)	-	31174..31467 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HGI43_RS00185 (HGI43_00185)	-	31467..32474 (+)	1008	WP_202133382.1	PDZ domain-containing protein	-
HGI43_RS00190 (HGI43_00190)	comB6	32480..33535 (+)	1056	WP_202135611.1	P-type conjugative transfer protein TrbL	Machinery gene
HGI43_RS00195 (HGI43_00195)	comB7	33551..33664 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HGI43_RS00200 (HGI43_00200)	comB8	33661..34404 (+)	744	WP_202135612.1	virB8 family protein	Machinery gene
HGI43_RS00205 (HGI43_00205)	comB9	34404..35372 (+)	969	WP_202132917.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGI43_RS00210 (HGI43_00210)	comB10	35365..36501 (+)	1137	WP_202135613.1	DNA type IV secretion system protein ComB10	Machinery gene
HGI43_RS00215 (HGI43_00215)	-	36571..37983 (+)	1413	WP_202132919.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HGI43_RS00220 (HGI43_00220)	gmd	37998..39143 (+)	1146	WP_180503157.1	GDP-mannose 4,6-dehydratase	-
HGI43_RS00225 (HGI43_00225)	-	39136..40068 (+)	933	WP_202132920.1	GDP-L-fucose synthase	-
HGI43_RS00230 (HGI43_00230)	hypE	40348..41346 (-)	999	WP_202132921.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42213.90 Da
• Isoelectric Point: 9.9555

>NTDB_id=437222 HGI43_RS00210 WP_202135613.1 35365..36501(+) (comB10) [Helicobacter pylori strain ASHA-001]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=437222 HGI43_RS00210 WP_202135613.1 35365..36501(+) (comB10) [Helicobacter pylori strain ASHA-001]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCTCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAGC
AAACACAACACCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCTCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96