Detailed information NTG0437218

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HGI43_RS00190
• Genome accession: NZ_CP051290
• Coordinates: 32480..33535 (+)
• Length: 351 a.a.
• NCBI ID: WP_202135611.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27480..38535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGI43_RS00160 (HGI43_00160)	-	27905..28318 (+)	414	WP_097682194.1	universal stress protein	-
HGI43_RS00165 (HGI43_00165)	-	28326..28601 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HGI43_RS00170 (HGI43_00170)	-	28601..30823 (+)	2223	WP_202135610.1	ATP-dependent Clp protease ATP-binding subunit	-
HGI43_RS00175 (HGI43_00175)	panD	30813..31163 (+)	351	WP_029647093.1	aspartate 1-decarboxylase	-
HGI43_RS00180 (HGI43_00180)	-	31174..31467 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HGI43_RS00185 (HGI43_00185)	-	31467..32474 (+)	1008	WP_202133382.1	PDZ domain-containing protein	-
HGI43_RS00190 (HGI43_00190)	comB6	32480..33535 (+)	1056	WP_202135611.1	P-type conjugative transfer protein TrbL	Machinery gene
HGI43_RS00195 (HGI43_00195)	comB7	33551..33664 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HGI43_RS00200 (HGI43_00200)	comB8	33661..34404 (+)	744	WP_202135612.1	virB8 family protein	Machinery gene
HGI43_RS00205 (HGI43_00205)	comB9	34404..35372 (+)	969	WP_202132917.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGI43_RS00210 (HGI43_00210)	comB10	35365..36501 (+)	1137	WP_202135613.1	DNA type IV secretion system protein ComB10	Machinery gene
HGI43_RS00215 (HGI43_00215)	-	36571..37983 (+)	1413	WP_202132919.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39765.74 Da
• Isoelectric Point: 9.0413

>NTDB_id=437218 HGI43_RS00190 WP_202135611.1 32480..33535(+) (comB6) [Helicobacter pylori strain ASHA-001]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=437218 HGI43_RS00190 WP_202135611.1 32480..33535(+) (comB6) [Helicobacter pylori strain ASHA-001]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAATTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTTTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.291	100	0.983