Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HEP73_RS05570 Genome accession   NZ_CP051189
Coordinates   1316519..1317907 (-) Length   462 a.a.
NCBI ID   WP_185822434.1    Uniprot ID   A0A7G7STX4
Organism   Xanthomonas sp. GW     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311519..1322907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP73_RS05550 (HEP73_01089) - 1311842..1312798 (-) 957 WP_185822430.1 lysylphosphatidylglycerol synthase domain-containing protein -
  HEP73_RS05555 (HEP73_01090) - 1312795..1313583 (-) 789 WP_185822431.1 class I SAM-dependent methyltransferase -
  HEP73_RS05560 (HEP73_01091) - 1313617..1314474 (-) 858 WP_185822432.1 glycosyltransferase family 2 protein -
  HEP73_RS05565 (HEP73_01092) pilB 1314624..1316363 (+) 1740 WP_185822433.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HEP73_RS05570 (HEP73_01093) pilR 1316519..1317907 (-) 1389 WP_185822434.1 sigma-54 dependent transcriptional regulator Regulator
  HEP73_RS05575 (HEP73_01094) - 1317982..1319595 (-) 1614 WP_185822435.1 HAMP domain-containing sensor histidine kinase -
  HEP73_RS05580 (HEP73_01095) sucC 1319895..1321058 (+) 1164 WP_179566646.1 ADP-forming succinate--CoA ligase subunit beta -
  HEP73_RS05585 (HEP73_01096) sucD 1321232..1322104 (+) 873 WP_179566644.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49851.29 Da        Isoelectric Point: 6.5828

>NTDB_id=436731 HEP73_RS05570 WP_185822434.1 1316519..1317907(-) (pilR) [Xanthomonas sp. GW]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVRHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRVTPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=436731 HEP73_RS05570 WP_185822434.1 1316519..1317907(-) (pilR) [Xanthomonas sp. GW]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGCTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAGGCACGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGGGTCGGCAAGGAGCTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCATTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTCGCCGAGCTGCCGTTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGTGC
CTCGATCGAGGTGCCGACCGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAATTGCGCGTGCCGCCACTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCATGGCCGGGTCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCCGCCGAAGCCGCCCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCGGCGCAGCTCGGCATCACGTTTCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7STX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.092

99.351

0.617
  pilR Acinetobacter baumannii strain A118

46.681

100

0.472